Gene
RNA
| Item | Value |
|---|---|
| gene id | G408011 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000299 |
| NCBI id | null |
| chromosome length | 6567443 |
| location | 6441341 ~ 6441631 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU468810 | True | 291 | lncRNA | 0.66 | 1 | 6441341 | 6441631 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000299_06362136_06376918 | NA | coding | downstream | 64106 | 6362004 ~ 6377235 (-) |
| CI01000299_06352251_06359190 | DUSP27 | coding | downstream | 81138 | 6351435 ~ 6360203 (-) |
| CI01000299_06337727_06341840 | NA | coding | downstream | 99501 | 6337139 ~ 6341840 (-) |
| CI01000299_06320613_06321046 | NA | coding | downstream | 120295 | 6320564 ~ 6321046 (-) |
| CI01000299_06310939_06311125 | NA | coding | downstream | 130112 | 6310939 ~ 6311229 (-) |
| CI01000299_06476844_06477950 | PRS23, PRSS23 | coding | upstream | 34352 | 6475983 ~ 6479549 (-) |
| CI01000299_06497414_06502931 | CK073, HIKESHI | coding | upstream | 55525 | 6497156 ~ 6502931 (-) |
| CI01000299_06505676_06510021 | EED, EED.S, EED.L | coding | upstream | 63926 | 6505557 ~ 6510144 (-) |
| CI01000299_06516832_06521405 | NA | coding | upstream | 74964 | 6516595 ~ 6521405 (-) |
| CI01000299_06522084_06525262 | NA | coding | upstream | 80337 | 6521968 ~ 6525262 (-) |
| G408010 | NA | non-coding | downstream | 871 | 6440247 ~ 6440470 (-) |
| G408009 | NA | non-coding | downstream | 1605 | 6439521 ~ 6439736 (-) |
| G408001 | NA | non-coding | downstream | 8574 | 6417126 ~ 6432767 (-) |
| G407927 | NA | non-coding | downstream | 48985 | 6392044 ~ 6392356 (-) |
| G407986 | NA | non-coding | downstream | 51697 | 6389376 ~ 6389644 (-) |
| G408013 | NA | non-coding | upstream | 842 | 6442473 ~ 6442776 (-) |
| G407948 | NA | non-coding | upstream | 9031 | 6450662 ~ 6451378 (-) |
| G407946 | NA | non-coding | upstream | 11164 | 6452795 ~ 6453660 (-) |
| G407922 | NA | non-coding | upstream | 12462 | 6454093 ~ 6457229 (-) |
| G407937 | NA | non-coding | upstream | 17148 | 6458779 ~ 6459120 (-) |
| G407805 | NA | other | downstream | 605352 | 5835889 ~ 5835989 (-) |
| CI01000299_05428160_05443433 | APP, APPA | other | downstream | 985233 | 5427661 ~ 5443433 (-) |
| CI01000299_04913779_04927715 | NA | other | downstream | 1512523 | 4913373 ~ 4927715 (-) |
| G407413 | NA | other | downstream | 1890620 | 4475994 ~ 4550721 (-) |
| CI01000299_06526127_06532048 | CEP97 | other | upstream | 90370 | 6526127 ~ 6532048 (-) |
