XLOC_012743


Basic Information

Item Value
gene id XLOC_012743
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 18740827 ~ 18812908 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027097
CTTCAGTACAAATGTCGGGAGTCAAACTGGCAGCATCAGGAAAGTCCTCGGTACAGCAGTCGGGACTCATACCGCCAGCATTAGGAGAGTCTTCAGTACAAATGTCGGGAGTCAAACTGGCAGCATCAGGAAAGTCCTCGGTACAGCAGTCGGGACTCATACCGCCAGCATTAGGAGAGTCTTCAGTACAAATGTCGGGAGTCAAACTGGCAGCATCAGGAAAGTCCTCGGTACAGCAGTCGGGACTCATACCGGCAGTACCTGGAGAGACCTCTGTATTCCTGTCATGAGTCGAAACGGCAACACCAGAAGAGAACTCCGCAGAGCAGTTGGGAGTTAAACAGATAGCAAAAGAGACCTCAGTGCTTCTGTCAGGACTCAAACAGGCAGCAGCAGGAGACTCCTCAGTATAGCAGTCGTGACTCAAACGGGCAGTACCTGGAGAGACCTCTGTATTCCTGTCATGAGTCGAAACGGCAACACCAGAAGAGAACTCCGCAGAGCAGTTGGGAGTTAAACAGATAGCAAAAGAGACCTTATTACTTCTGTCAGGACTCAAACTGGCAGCAGGAGAGACCTCAGTATTGCTGTCAGGACTCAAACTGGCAGCAGGAGACTCCTCAGTACTGCTGTCGGGACTCAAACTGGCCGCTGTATGAGATAGGGCAGCACTGTTGTCAGGAGCCAAACAGGCAGCAGGAGAGACTTCAGCACTGTGGTCAGATGAGGCCTTTGTGTATTTTTTGCCACCTCTTTGATGGGAAAAGGCCCACCTCCAAATTGATTTCTTCTTTTTAGAAGAACGCTTCTTTCCTCTTTCCACATCTCTCTCTAGATGTAAATTGTTTTCCACTTCATCTGTGGAAGATTGTGGTGGTGTACAATGATAGTAGTCCACACTGCCACAATCATTTCTTGACGGTGTACAACTTGAACTGAGCTGACCCATATTTGAATTGTCAGAGCTACAGAATGAACAAACCAACAAGAATTGCAGTAACATACAGTGTGATGTCACATATAGAACTCACAAATAGAGGCCAGCATTCTGTGGCTTCCGGTTTCTACGGTAACCAATTCCATTGTGTCCCACTGGCCCATGTCACCACgtttaaatcattaaattctcaagctgcgtcccaaatcgcatacttatgcactattctacgccattttgtagtataaatagtgtaagtagtgcgttcacactgaaaactctaaaaataataagtgcactttaattacccggatgatgcactcattcagccgctaaaatgaagtgtgtaatgatggacacttcacgcactcaacgaccgcaggtttgcttacgtagcggaaggggcggagctatcggacgcacatgttgaataactttatttattttggatggtgaaagcaaaattctccgacgagagtgattatagcgcctcccgatggtgaatgcggcaatactcacggcaggttttatatgatagtttggtcatttatttcaatgatttggcaaccgtcaaacgtcatcagggaaacggtttgaatttccgcttagtaaaaaaacattagtgtgccatttgggacaacactacatacatatactttcctgttgagtgtgtaagtgcataagtacatagtgcatgagtgcatagtgtatagtgtgccatttgggacgcagcttcag

Function

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process
GO:0006259 DNA metabolic process biological_process
GO:0006281 DNA repair biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0015630 microtubule cytoskeleton cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0043226 organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0004519 endonuclease activity molecular_function
GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027097 True 1675 lncRNA 0.46 3 18740827 18812908

Neighbor

gene id symbol gene type direction distance location
XLOC_012741 BX649641.6 coding upstream 14734 18725978 ~ 18726093 (+)
XLOC_012740 NA coding upstream 30672 18708889 ~ 18710155 (+)
XLOC_012739 NA coding upstream 63943 18675673 ~ 18676884 (+)
XLOC_012738 st3gal2 coding upstream 109745 18612388 ~ 18631082 (+)
XLOC_012737 siah1 coding upstream 268570 18439332 ~ 18472257 (+)
XLOC_012745 NA coding downstream 14311 18827219 ~ 18828485 (+)
XLOC_012746 pllp coding downstream 48451 18861359 ~ 18870632 (+)
XLOC_012747 arih1 coding downstream 66825 18879733 ~ 18901017 (+)
XLOC_012748 BX571681.4 coding downstream 97458 18910366 ~ 18911615 (+)
XLOC_012749 NA coding downstream 155982 18968890 ~ 18969766 (+)
XLOC_012734 NA non-coding upstream 361469 18113043 ~ 18379358 (+)
XLOC_012752 BX548060.1 non-coding downstream 213081 19025989 ~ 19033213 (+)
XLOC_012756 NA non-coding downstream 600189 19413097 ~ 19416040 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G482179 NA non-coding CI01000339 null 3332359 ~ 3337219 (+)