XLOC_012747 (arih1)


Basic Information

Item Value
gene id XLOC_012747
gene name arih1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 18879733 ~ 18901017 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025452
TCTCTTTGTTGGCCCAGCAGCAGCGTCGCTCCTCTGTTGTTGTTTTCTCTGCTGCTGGAAAAACTGGAATGCTAGCGAGCTAAAGAAGTATTCTCGTTTGCTTCTGCTCTCCCCGCCAAAAGACGAACACCAAACTCGCCCCTGCTTGGCGTGTCGTTATACGGTAAGCGCGACCCAGTCATGGACTCGGACGAGGGTTACAATTACGAATTCGACGACGAGGAAGAGGAATGCAGCGAAGACAGCGGCGAAGAGGAGACCGCGGACGACACCCTGGAGCTCGGCGAGGTGGAGTTGGTTGATCCCGTTGTGGCCGGCGGAGAGCGAGACGACTGCGGGGAGACCGGGGGTAGCGGCCTCGGGCCCGGGCAGGACGAGGAAGACTACCGCTTTGAAGTTCTTACTGCCGAGCAGATCCTGCAGCATATGGTGGAGTGTATCCGGGAGGTCAACGAGGTCATCCAGAATCCTGCTACCATCACTAGAATATTACTTAGTCATTTCAACTGGGACAAGGAAAAGCTGATGGAAAGGTACTTTGATGGTAACCTAGACAAGCTGTTTTCAGAGTGTCACGTTATAAACCCCAGCAAGAAATCTCGGACACGCCTCATGAACACAAGATCGTCGGCACAGGACATGCCATGTCAGATCTGCTATCTCAACTATCCTAACTCGTACTTCACTGGTCTGGAATGTGGGCACAAGTTCTGCATGCAGTGCTGGGGCGATTACTTAACCACCAAAATCATAGAGGAAGGAATGGGACAGACCATTTCTTGTCCTGCTCATAGCTGTGATATTCTGGTGGACGACAACACCGTAATGAGACTGATTACAGATTCAAAAGTGAAGTTGAAGTACCAGCATTTAATAACCAATAGTTTTGTAGAGTGTAACCGACTGTTAAAATGGTGTCCTGCGCCCGACTGTCATCATGTTGTCAAAGTACAGTACCCAGATGCCAAACCTGTAAGATGCAAGTGTGGACGACAGTTTTGCTTCAACTGTGGGGAGAATTGGCATGATCCAGTGAAGTGTAAGtggttaagaaaatggattaaaaaatgtgaCGATGACAGTGAGACATCGAACTGGATTGCAGCCAATACAAAGGAATGTCCGAAATGCCACGTCACCATAGAGAAAGATGGTGGCTGTAACCATATGGTGTGCCGAAACCAGAACTGCAAAGCAGAGTTTTGCTGGGTCTGTCTGGGCCCCTGGGAGCCACATGGTTCTGCGTGGTACAACTGTAATCGCTATAATGAGGATGATGCCAaggcagcacgggatgcgcaggAGCGTTCCAGAGCAGCCCTGCAGAGGTACCTGTTCTACTGCAACCGCTACATGAACCACATGCAGAGCCTGCGCTTCGAGCACAAGCTGTACGCTCAGGTCAAGCAGAAGATGGAGGAGATGCAGCAGCACAACATGTCGTGGATTGAGGTGCAGTTCCTGAAGAAGGCCGTGGATGTGTTGTGCCAGTGCCGCTCCACGCTCATGTTCACCTACGTTTTTGCATTCTACCTCAAGAAGAACAACCAGTCTATCATTTTCGAGAATAACCAGGCAGATCTGGAAAATGCCACAGAGGTTCTATCTGGATACCTGGAGCGAGACATTTCCCAAGATTCCCTGCAGGACATCAAGCAGAAAGTACAAGATAAATACAGATACTGTGAGAGCAGACGGAGAGTCCTGCTGCAGCATGTACACGAAGGCTATGACAAAGACCTGTGGGAGTACATCGAGGATTGAGATTGATCTCCGCACCACAGACTCTCGGAGAGAAGCTCCAGCCACTAGAGCACTGATGCAATGACCAGAGCAGCCCTGACCAGCTGCCTCCTGCCTGGCCAAGCCGCCCTGCGTTGCATCACTTCCCCAGAACAgcagaaattatatttaaattagaatattacagaataaaatattacatgctCAACAGTATTGTCAGCAGCGCAAGACTGAGAAATCCAACAAAAAGGCAAAAATCTCTTCCTTTTGCTTGCATCGTAAGATCTTCCCCCTCCTcggaaacaaatgttttcctccTCCTCAGTTACGTTTGTGGACGTGTTctgtttgaatttattttaaatacactattttttttttggtttgttttgtgtgcgcgcgcgtgtgtgtgtgtgtggaaaatgGACTTtggttttttttctcaaaaatggctttaataattttgaccatgtCTGGCAAGCTCTGTGTTGTTTGGGTTGCTGaatgttgattggttgattgttaAGAAGGCTTCTTTTTGGCTtcgtgaagaaaaaaaaagaaaacaccaaaaaaaaaaaagacgacaAAATCGGTATTTTtcaatttgtaaataatgcatatGCATGGAAGTTTAAAGAGTAAGAGTGGCATGTGTTTGCAtcatttttaaaagatatttatctttacaaatataaaaaaactgtatattt

Function

symbol description
arih1 Predicted to enable ubiquitin conjugating enzyme binding activity; ubiquitin protein ligase activity; and zinc ion binding activity. Predicted to be involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process; protein polyubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to be located in Lewy body and nuclear body. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human ARIH1 (ariadne RBR E3 ubiquitin protein ligase 1).

GO:

id name namespace
GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process biological_process
GO:0016567 protein ubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0000209 protein polyubiquitination biological_process
GO:0019005 SCF ubiquitin ligase complex cellular_component
GO:0097413 Lewy body cellular_component
GO:0000151 ubiquitin ligase complex cellular_component
GO:0005634 nucleus cellular_component
GO:0016604 nuclear body cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0031462 Cul2-RING ubiquitin ligase complex cellular_component
GO:0031463 Cul3-RING ubiquitin ligase complex cellular_component
GO:0031464 Cul4A-RING E3 ubiquitin ligase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function
GO:0031624 ubiquitin conjugating enzyme binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0061630 ubiquitin protein ligase activity molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-030131-5213 Predicted to enable ubiquitin conjugating enzyme binding activity; ubiquitin protein ligase activity; and zinc ion binding activity. Predicted to be involved in positive regulation of proteasomal ubiquitin-dependent protein catabolic process; protein polyubiquitination; and ubiquitin-dependent protein catabolic process. Predicted to be located in Lewy body and nuclear body. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human ARIH1 (ariadne RBR E3 ubiquitin protein ligase 1).

Ensembl:

ensembl_id ENSDARG00000003616

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025452 True 2456 mRNA 0.47 14 18879733 18901017

Neighbor

gene id symbol gene type direction distance location
XLOC_012746 pllp coding upstream 9101 18861359 ~ 18870632 (+)
XLOC_012745 NA coding upstream 51248 18827219 ~ 18828485 (+)
XLOC_012743 NA coding upstream 66825 18740827 ~ 18812908 (+)
XLOC_012744 NA coding upstream 79681 18798840 ~ 18800052 (+)
XLOC_012742 NA coding upstream 108839 18733147 ~ 18770894 (+)
XLOC_012748 BX571681.4 coding downstream 9349 18910366 ~ 18911615 (+)
XLOC_012749 NA coding downstream 67873 18968890 ~ 18969766 (+)
XLOC_012750 hacd3 coding downstream 81060 18982077 ~ 18995283 (+)
XLOC_012751 slc24a1 coding downstream 105046 19006063 ~ 19039960 (+)
XLOC_012752 BX548060.1 coding downstream 124972 19025989 ~ 19033213 (+)
XLOC_012741 BX649641.6 non-coding upstream 153640 18725978 ~ 18726093 (+)
XLOC_012756 NA non-coding downstream 512080 19413097 ~ 19416040 (+)
XLOC_012759 NA non-coding downstream 623824 19524841 ~ 19620953 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_04824249_04836061 ARIH1 coding CI01000013 null 4823906 ~ 4836061 (-)
bowfin (Amia calva) AMCG00007728 arih1,LOC108423892,LOC107742882,LOC107672283,LOC107549652,LOC105892496 coding CM030123.1 CM030123.1 28104468 ~ 28128157 (-)