XLOC_012751 (slc24a1)


Basic Information

Item Value
gene id XLOC_012751
gene name slc24a1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 19006063 ~ 19039960 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025455
CcgggaataaaaaatatatttacaattttaatactAATCTGTAATCCATAGTTCATAAAGATAATTACCAATAATTACAAAAGAGAAATTATTTTCTCGAAGTAATTGTTAGCCTTCGATTTGTATTTTTCTAGCCACTTTACATCGACGTTCAATTTCTGGGAATTGTGAATGAGACGCAAATGATCAGAATAATTGTGCTAAAATGGCTGGAGGAGTAATGAGAGTGTGGGGTGAGAGTACATCTAATCCTCTTAAAAGACTTCAGGTATTAGTTTTTGTGCTGATCCACGCTGAAGAGCCTGTCCTGCGGTGCGTCCTGCTTGACCTGAAGCCGCTCTCTCTCAGCATCCGCGCCTTCCCTGCAGTCCAGctgtgagggagagagagagagacgtagCGCTCATCGCATCGCCCGACGACCGGTCTGTGAGAGGAAACCTCAGCATCACAGAGAAAATGAGATGAAACAGTCTGAGAGTGAGTCCTGCATACCCCTGCATCTTTTAGCGGGAGGTTCTGGGTGTCACAGCCCTAAAAAACAACTCTGTGCCCTTTAGGAAACACACTAGAAAATGTTCCTGACTCGAAGGAAGAGACTTCATCTCAGCCGGATTATATTTCTTCTGTCCGGGGTTTTCCTTTGCTCTTTATATCAACTCACGATCAGAGCCAGACTTCCAGATCCCTGGCCCGAACCCCAAAGAGCCGGAGACCCTGAGGATGGCTCTGGACTTGCCCTGGAAGGAGGACTGTCTGAAATGCCAGAAGTCATGACTAATTCGACCACTGTTCACCCAAAAAACTCAGATGAAGTCCGTTCATCAGAGACTGTAACCAATGCACCTGTCCTAACAACATCTACTACAACTGAGGCACCTTCCACAACAACAAACAGGACAATCGTCCACTGTATCTATGTGGATCCAGACCTCCCAAAACCCACTCCAGTTCCAACTCCAGCAACTGAAACGACCACTCTGGTGCCCAACACTACCGCGTCCCAACCTGGAGATGCACCACACATGAAGGGCGAGTATCCGGAGGACATCTTTTCCATTGAGGATCGACGCAAAGGCTGGGTCTCTCTCCATATTTTTGGAATGGTAtacatgtttgtttctttggCCATCGTCTGCGACGAGTTTTTTGTCCCAACTTTAGGGGTTATAACAGACAAACTGGCCATCTCTGATGATGTAGCCGGGGCGACGTTCATGGCCGCTGGAGGCTCAGCTCCTGAACTTTTCACCTCTTTGATTGGAGTCTTCATTTCTCATAGCAATGTGGGCATTGGGACCATCGTTGGCTCGGCTGTTTTTAACATCCTCTTCGTAATTGGAATGTGTGCACTGTTTTCACGCGAGATGCTTCACCTCACCTGGTGGCCTCTCTTTCGGGACGTGTCCTTCTATATCCTGGATCTCATCATGCTTATCATCTTCTTCCTGGACAACACCATTATGTGGTGGGAGAGCATGATGCTGGTGGGAGGTTATGCTCTATATGTAACCTTCATGAAGTTCAATGTTCAGTTAGAGCGCGCCTTTAAGTCTCAGCTCAGCAAACACAAGAGCATCGTCAAAGTCATTGCGGTGGAAGAACCAGAGAAGGATAATGGAACCTCAGGTGAAGAGAACAGGCCACCTGAACCAGAAGACAAGAATCGATTAAAGCTGAAGCCCACACTGCAGCGCGGGGGCAGTTCAGCCTCTCTGCATAACAGCACCATGAGGAACACCATCTTCCAGCTGATGATTCACACTCTGGATCCTCTTGGAGAGGTGAAATTTAAAGACAAGGCTCAGATTTTGAACGACATGGCCCGGGGGAAGGTAGAGAACAAAAAGAAGGAAAAATCTGGTGAAGGTGATGATCAATCGGAGCAGACCAAGGATTCAAAAGACGCGCCTCCAGGAGCCAAAGATGAAGACACCAATCAGAAGTCTGAGGCACAAAAGGATGGAGACATTGCAGCAGGAGGAGGTTCTGAAAATCCAGGAGGTTCAGACAATTCAggggatgatgatgaagatgacagTGATGAAGAGAGTGATGATGAcgatgacgacgatgatgatgatgacgacgatgatgatgaaaatgaagaTGAAGCTGGGGAAGATGGAGATGAACCGTTGTCTTTAGAGTGGCCGGACACCAGACGTAAACAGGCCACGTATTTGTTTTTGCTGCCCATTGTCTTTCCACTGTGGCTGACCGTTCCAGATGTCAGAAACCCTGCATCCAAGAAGTTCTTCGTCATTACCTTTCTTGGCTCAATAGTGTGGATTGCTATATTTTCCTATCTGATGGTGTGGTGGGCACATCAGGTTGGCGAGACCATTGGCATCTCTGAGGAGATCATGGGTCTTACTATTCTGGCTGCCGGAACATCGATTCCTGATTTAATCACCAGTGTGATTGTGGCAAGGAAAGGCTTGGGAGACATGGCTGTCTCCAGCTCTGTAGGCAGCAACATATTTGACATCACCATGGGGCTGCCGGTGCCCTGGCTGATGTTCTCGTTCTTCCATTCCTTTGCCCCGGTGCCCGTGAGCAGTAATGGTCTGTTCTGTGCCATCGTGCTGCTCTTCCTCATGCTCCTCTTCGTCATTATTTCCATCGCTGCCTGTAAATGGAGGATGAACAAAGTGCTGGGCTTCACCATGTTCATCCTCTACTTTGTGTTCCTGGTGCTCAGTGTCATGCTGGAGGATCGAATCATCGTGTGTCCCGTCTCCATCTGAGCTCTAATATAACATACTGGTATTTTTAAAGTGTCCCTGGACTCGCTGTGTCGACTTCTTCTGTATTACGCAAGATTGTTTTTTTGTAACAGGATGCAATAACTGGGCATAATGTATTTTGTTAAGGTGACATCACAGTTCTTTCACAGGTCCTGTCCCAAATGGCTACTATTTTTGGTATCCACTGTTTGTTGAAGGAATGGGGTATGGATTGTTGGGTGATAGACTGCATGTGGGCTAACCAGTGTAGGCTTTGCAAAAGGGCACATTGAGCCCACATACAGAGGCGCTGTTGAACACTCTTTTGAACTGTAAAATGACAAATAGGACGCCCTACTGTACTGTGGACTTAACAAACACACTACGATTATGATTGCATAATCAAAGGCCACGTcaagtgtgccatttgagacagGGCCACGAGTGCTACATATGGAGAAATCACATTTTTCTCACATTCTCTCTCGATGATTTGTAAgtgcaaactttaaaaatatctgtttattaagGGTTGCCTGTAGGTTGCGATATATGGGTGTTTTCATCTAATTTACACTTTTGAATTGACCCTCTTGCTGGAGTTTGATTGACATGCAATAttgccaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcaatcagtgccTGCACCACTGTCCGCCATTATGTCCGACAAACAAAACAGTCTGACAAACCAAGTGTAGTAGAGTAAGATCTGCGATTAACATGAACAAGGATGAAAACTTGCTTCTACGGGACCTGCAATGCAAATAGCAGGTACCCAGAAAAAAAGATCAATTCGCATACTTATATTACGCCCTAAAAGTAAGTATGTACTTTCTTTGTAAAggaaaagtacatacttttaagAGTATAACAGGCggcattgtggctcagtggttagcactgtcgcatcacagcaacaaggtcactaattcg
>TCONS_00025457
GTCTGTGAGAGGAAACCTCAGCATCACAGAGAAAATGAGATGAAACAGTCTGAGAGTGAGTCCTGCATACCCCTGCATCTTTTAGCGGGAGGTTCTGGGTGTCACAGCCCTAAAAAACAACTCTGTGCCCTTTAGGAAACACACTAGAAAATGTTCCTGACTCGAAGGAAGAGACTTCATCTCAGCCGGATTATATTTCTTCTGTCCGGGGTTTTCCTTTGCTCTTTATATCAACTCACGATCAGAGCCAGACTTCCAGATCCCTGGCCCGAACCCCAAAGAGCCGGAGACCCTGAGGATGGCTCTGGACTTGCCCTGGAAGGAGGACTGTCTGAAATGCCAGAAGTCATGACTAATTCGACCACTGTTCACCCAAAAAACTCAGATGAAGTCCGTTCATCAGAGACTGTAACCAATGCACCTGTCCTAACAACATCTACTACAACTGAGGCACCTTCCACAACAACAAACAGGACAATCGTCCACTGTATCTATGTGGATCCAGACCTCCCAAAACCCACTCCAGTTCCAACTCCAGCAACTGAAACGACCACTCTGGTGCCCAACACTACCGCGTCCCAACCTGGAGATGCACCACACATGAAGGGCGAGTATCCGGAGGACATCTTTTCCATTGAGGATCGACGCAAAGGCTGGGTCTCTCTCCATATTTTTGGAATGGTAtacatgtttgtttctttggCCATCGTCTGCGACGAGTTTTTTGTCCCAACTTTAGGGGTTATAACAGACAAACTGGCCATCTCTGATGATGTAGCCGGGGCGACGTTCATGGCCGCTGGAGGCTCAGCTCCTGAACTTTTCACCTCTTTGATTGGAGTCTTCATTTCTCATAGCAATGTGGGCATTGGGACCATCGTTGGCTCGGCTGTTTTTAACATCCTCTTCGTAATTGGAATGTGTGCACTGTTTTCACGCGAGATGCTTCACCTCACCTGGTGGCCTCTCTTTCGGGACGTGTCCTTCTATATCCTGGATCTCATCATGCTTATCATCTTCTTCCTGGACAACACCATTATGTGGTGGGAGAGCATGATGCTGGTGGGAGGTTATGCTCTATATGTAACCTTCATGAAGTTCAATGTTCAGTTAGAGCGCGCCTTTAAGTCTCAGCTCAGCAAACACAAGAGCATCGTCAAAGTCATTGCGGTGGAAGAACCAGAGAAGGATAATGGAACCTCAGGTGAAGAGAACAGGCCACCTGAACCAGAAGACAAGAATCGATTAAAGCTGAAGCCCACACTGCAGCGCGGGGGCAGTTCAGCCTCTCTGCATAACAGCACCATGAGGAACACCATCTTCCAGCTGATGATTCACACTCTGGATCCTCTTGGAGAGGGTGATGATCAATCGGAGCAGACCAAGGATTCAAAAGACGCGCCTCCAGGAGCCAAAGATGAAGACACCAATCAGAAGTCTGAGGCACAAAAGGATGGAGACATTGCAGCAGGAGGAGGTTCTGAAAATCCAGGAGGTTCAGACAATTCAggggatgatgatgaagatgacagTGATGAAGAGAGTGATGATGAcgatgacgacgatgatgatgatgacgacgatgatgatgaaaatgaagaTGAAGCTGGGGAAGATGGAGATGAACCGTTGTCTTTAGAGTGGCCGGACACCAGACGTAAACAGGCCACGTATTTGTTTTTGCTGCCCATTGTCTTTCCACTGTGGCTGACCGTTCCAGATGTCAGAAACCCTGCATCCAAGAAGTTCTTCGTCATTACCTTTCTTGGCTCAATAGTGTGGATTGCTATATTTTCCTATCTGATGGTGTGGTGGGCACATCAGGTTGGCGAGACCATTGGCATCTCTGAGGAGATCATGGGTCTTACTATTCTGGCTGCCGGAACATCGATTCCTGATTTAATCACCAGTGTGATTGTGGCAAGGAAAGGCTTGGGAGACATGGCTGTCTCCAGCTCTGTAGGCAGCAACATATTTGACATCACCATGGGGCTGCCGGTGCCCTGGCTGATGTTCTCGTTCTTCCATTCCTTTGCCCCGGTGCCCGTGAGCAGTAATGGTCTGTTCTGTGCCATCGTGCTGCTCTTCCTCATGCTCCTCTTCGTCATTATTTCCATCGCTGCCTGTAAATGGAGGATGAACAAAGTGCTGGGCTTCACCATGTTCATCCTCTACTTTGTGTTCCTGGTGCTCAGTGTCATGCTGGAGGATCGAATCATCGTGTGTCCCGTCTCCATCTGA
>TCONS_00025456
GTCTGTGAGAGGAAACCTCAGCATCACAGAGAAAATGAGATGAAACAGTCTGAGAGTGAGTCCTGCATACCCCTGCATCTTTTAGCGGGAGGTTCTGGGTGTCACAGCCCTAAAAAACAACTCTGTGCCCTTTAGGAAACACACTAGAAAATGTTCCTGACTCGAAGGAAGAGACTTCATCTCAGCCGGATTATATTTCTTCTGTCCGGGGTTTTCCTTTGCTCTTTATATCAACTCACGATCAGAGCCAGACTTCCAGATCCCTGGCCCGAACCCCAAAGAGCCGGAGACCCTGAGGATGGCTCTGGACTTGCCCTGGAAGGAGGACTGTCTGAAATGCCAGAAGTCATGACTAATTCGACCACTGTTCACCCAAAAAACTCAGATGAAGTCCGTTCATCAGAGACTGTAACCAATGCACCTGTCCTAACAACATCTACTACAACTGAGGCACCTTCCACAACAACAAACAGGACAATCGTCCACTGTATCTATGTGGATCCAGACCTCCCAAAACCCACTCCAGTTCCAACTCCAGCAACTGAAACGACCACTCTGGTGCCCAACACTACCGCGTCCCAACCTGGAGATGCACCACACATGAAGGGCGAGTATCCGGAGGACATCTTTTCCATTGAGGATCGACGCAAAGGCTGGGTCTCTCTCCATATTTTTGGAATGGTAtacatgtttgtttctttggCCATCGTCTGCGACGAGTTTTTTGTCCCAACTTTAGGGGTTATAACAGACAAACTGGCCATCTCTGATGATGTAGCCGGGGCGACGTTCATGGCCGCTGGAGGCTCAGCTCCTGAACTTTTCACCTCTTTGATTGGAGTCTTCATTTCTCATAGCAATGTGGGCATTGGGACCATCGTTGGCTCGGCTGTTTTTAACATCCTCTTCGTAATTGGAATGTGTGCACTGTTTTCACGCGAGATGCTTCACCTCACCTGGTGGCCTCTCTTTCGGGACGTGTCCTTCTATATCCTGGATCTCATCATGCTTATCATCTTCTTCCTGGACAACACCATTATGTGGTGGGAGAGCATGATGCTGGTGGGAGGTTATGCTCTATATGTAACCTTCATGAAGTTCAATGTTCAGTTAGAGCGCGCCTTTAAGTCTCAGCTCAGCAAACACAAGAGCATCGTCAAAGTCATTGCGGTGGAAGAACCAGAGAAGGATAATGGAACCTCAGGTGAAGAGAACAGGCCACCTGAACCAGAAGACAAGAATCGATTAAAGCTGAAGCCCACACTGCAGCGCGGGGGCAGTTCAGCCTCTCTGCATAACAGCACCATGAGGAACACCATCTTCCAGCTGATGATTCACACTCTGGATCCTCTTGGAGAGGTGAAATTTAAAGACAAGGCTCAGATTTTGAACGACATGGCCCGGGGGAAGGTAGAGAACAAAAAGAAGGAAAAATCTGGTGAAGGTGATGATCAATCGGAGCAGACCAAGGATTCAAAAGACGCGCCTCCAGGAGCCAAAGATGAAGACACCAATCAGAAGTCTGAGGCACAAAAGGATGGAGACATTGCAGCAGGAGGAGGTTCTGAAAATCCAGGAGGTTCAGACAATTCAggggatgatgatgaagatgacagTGATGAAGAGAGTGATGATGAcgatgacgacgatgatgatgatgacgacgatgatgatgaaaatgaagaTGAAGCTGGGGAAGATGGAGATGAACCGTTGTCTTTAGAGTGGCCGGACACCAGACGTAAACAGGCCACGTATTTGTTTTTGCTGCCCATTGTCTTTCCACTGTGGCTGACCGTTCCAGATGTCAGAAACCCTGCATCCAAGAAGTTCTTCGTCATTACCTTTCTTGGCTCAATAGTGTGGATTGCTATATTTTCCTATCTGATGGTGTGGTGGGCACATCAGGTTGGCGAGACCATTGGCATCTCTGAGGAGATCATGGGTCTTACTATTCTGGCTGCCGGAACATCGATTCCTGATTTAATCACCAGTGTGATTGTGGCAAGGAAAGGCTTGGGAGACATGGCTGTCTCCAGCTCTGTAGGCAGCAACATATTTGACATCACCATGGGGCTGCCGGTGCCCTGGCTGATGTTCTCGTTCTTCCATTCCTTTGCCCCGGTGCCCGTGAGCAGTAATGGTCTGTTCTGTGCCATCGTGCTGCTCTTCCTCATGCTCCTCTTCGTCATTATTTCCATCGCTGCCTGTAAATGGAGGATGAACAAAGTGCTGGGCTTCACCATGTTCATCCTCTACTTTGTGTTCCTGGTGCTCAGTGTCATGCTGGAGGATCGAATCATCGTGTGTCCCGTCTCCATCTGA

Function

symbol description
slc24a1 Predicted to enable calcium channel activity and calcium, potassium:sodium antiporter activity. Predicted to be involved in calcium ion transmembrane transport; cellular calcium ion homeostasis; and regulation of synaptic plasticity. Predicted to act upstream of or within calcium ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in congenital stationary night blindness 1D. Orthologous to human SLC24A1 (solute carrier family 24 member 1).

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0055085 transmembrane transport biological_process
GO:0060291 long-term synaptic potentiation biological_process
GO:0060292 long-term synaptic depression biological_process
GO:0006874 cellular calcium ion homeostasis biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008273 calcium, potassium molecular_function
GO:0005262 calcium channel activity molecular_function

KEGG:

id description
ko04744 Phototransduction
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-060503-191 Predicted to enable calcium channel activity and calcium, potassium:sodium antiporter activity. Predicted to be involved in calcium ion transmembrane transport; cellular calcium ion homeostasis; and regulation of synaptic plasticity. Predicted to act upstream of or within calcium ion transport and transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Human ortholog(s) of this gene implicated in congenital stationary night blindness 1D. Orthologous to human SLC24A1 (solute carrier family 24 member 1).

Ensembl:

ensembl_id ENSDARG00000041431

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025455 False 3753 mRNA 0.45 10 19006063 19039960
TCONS_00025457 False 2241 mRNA 0.49 8 19008560 19038957
TCONS_00025456 True 2325 mRNA 0.49 9 19008560 19038957

Neighbor

gene id symbol gene type direction distance location
XLOC_012750 hacd3 coding upstream 10780 18982077 ~ 18995283 (+)
XLOC_012749 NA coding upstream 36297 18968890 ~ 18969766 (+)
XLOC_012748 BX571681.4 coding upstream 94448 18910366 ~ 18911615 (+)
XLOC_012747 arih1 coding upstream 105046 18879733 ~ 18901017 (+)
XLOC_012746 pllp coding upstream 135431 18861359 ~ 18870632 (+)
XLOC_012753 si:dkey-242h9.5 coding downstream 61719 19101679 ~ 19103964 (+)
XLOC_012754 si:dkey-242h9.3 coding downstream 81024 19120984 ~ 19124312 (+)
XLOC_012755 rab11a coding downstream 91813 19131773 ~ 19139152 (+)
XLOC_012756 NA coding downstream 373137 19413097 ~ 19416040 (+)
XLOC_012757 map2k1 coding downstream 379160 19419120 ~ 19451165 (+)
XLOC_012745 NA non-coding upstream 177578 18827219 ~ 18828485 (+)
XLOC_012743 NA non-coding upstream 193155 18740827 ~ 18812908 (+)
XLOC_012759 NA non-coding downstream 484881 19524841 ~ 19620953 (+)
XLOC_012769 BX890624.2 non-coding downstream 1049421 20089381 ~ 20208129 (+)
XLOC_012771 NA non-coding downstream 1276483 20316443 ~ 20325221 (+)
XLOC_012772 NA non-coding downstream 1288159 20328119 ~ 20376935 (+)

Expression


Co-expression Network