XLOC_012755 (rab11a)


Basic Information

Item Value
gene id XLOC_012755
gene name rab11a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 19131773 ~ 19139152 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025462
CTGCTCGCTAAGCCGTTAGCATGGCTACTGCCTAATCACAGACAGACTGCAGTGCCGCAGCGGAGAGGACAGCGACGGGTCGCCTCCACTTTCCTTCACATTCTTCCATTGTTTGCGCTTTTGTTTTGATCGAGATGGGGACACGAGACGACGAATACGACTACTTGTTTAAAGtGGTCCTAATTGGAGACTCTGGTGTGGGGAAGAGTAACCTGCTGTCTCGTTTCACTCGCAATGAATTCAACCTCGAGAGCAAAAGCACTATTGGAGTGGAGTTCGCCACACGTAGCATTCAGGTGGATGGAAAGACCGTCAAGGCTCAGATCTGGGACACGGCAGGACAGGAGCGCTACCGAGCCATCACTTCAGCGTATTACCGTGGAGCTGTGGGGGCCCTCCTAGTGTATGACATCGCCAAGCATCTGACCTATGAGAATGTGGAACGCTGGCTTAAGGAGCTCCGAGACCACGCAGACAGCAACATTGTCATCATGCTGGTGGGCAATAAAAGTGACTTGCGTCACCTTCGGGCTGTGCCCACTGACGAAGCACGTGCATTTGCAGAGAAAAACGGTCTGTCCTTCCTAGAGACCTCAGCTTTGGATTCCACCAATGTAGAGACTGCTTTTCAGACCATCCTGACTGAAATCTACCGAATCGTATCCCAAAAGCAGATGTCTGACCGCCGAGACAATGACATGTCACCTAGCAACAATGTGGTGTCCATCCAGGTGCAACCTACTGAGAATAAACCAAAGATGCAGTGCTGCCAGAGCATCTAGCGACTCCTGTACCgaatccaccccccccccccccaaatccCCCACACGCCCACCTGCAACACCCCCTCCTCCCCTCCTCTTCAAGACTGCTTTGGGTCTGAGATGCAGCTGCACAACTAGGCTTGAGCACAGAGGCCGGTTCCAAAGCTGAGTCTCAAAGGGTCACCACCTGCAGTCTGGACTaagcttgttgttttttttggttgtttttttttttcggttggTTTTCTCCTTCCTGCCATGGTAGGCTTTTATATTGCAGAATTTTAATAATCATTTGTGCCGATCTTCACTGAAATGTCTTAATATATAATTTCATTCGCAAACGTGTGAGGTTCACTCATGTATGTCTTTAGTAGCAGCCCCCTCGTCACTGTCGTGTCTGGGGTGGAGGGGAGAAACGTGCAGTATTGGAGGTTTTGCTATATTTAATGTTGTGATTGTAGAAAGATGATGTACCTGATAGATGTTAGATGATGATTAGGGCCCAAAGACCACAGTCTTCACCTTTTTTGTCCATCTTCCAAGTATGGTTTACATTCGCATTCCCACTTCCTTCATGCATTCGGCACGGGGCGGCATTGAATTTCACCATCAGGCACGTAGCTTCTGCGCTCTTTTCTCTTGGCCATCATGTGCTTCTTTTGCATTGAGGTAGATTAGTGGTTTTAGTGCCTTTTTTGATGAACGTCACGTGCGGATGCTTTCATGCATGTGCTTTACTGCTGTCCGTGCCGGTGCTGCGAGGCCTTCATCACACGCTCGAATATAGTCTTATAGACCTTCTCTTTCGCTGTCACCAGCCCTTTCAGCTGTAGTCTTGGAGAAGCTTCAGTTTCTAATAAACAAAAACTGATGTCATAATTCATGAAGAGGGGAATGTTGTATTTGAAACACTACCACAAATGTTTTCAGTGTGAAATGAGGGAAAAGAGACTTCCTCTACATGTAACATGTTCATAACCGCaaacacgtcatgattttgcagGTCACACTCTGGCATTAAAGTCatggttcacctaaaaattgAAATTCTGCTGTTTGTTTACTGACTATATTTCAGCAGTAGAATGTCAGAACAGATCTTTTTTAAGTGGAAACTACAGCTTAGTCttttaaaagaacaaaataaataccTTTGGCTCCTGATTTCCTGAGCAAACTAAATGTCGAGTGAAAGTATGATCCACCAAAACAaaggtttcagctaaaaatctactTTAATTATCTACCAAAGGTAAAAAGTCAGGTAAATCAGCAGCGAATGTTCAGTTTTAGTTGAACTATCCTTGAGAGTCAGAACAAGAAAACACAAAACAGCGGCCAGTCGATGGCCACATCACATGAGAGCACTCTAGGGAATAGACTGGatactttctttctttatttttttgcactgaatgtaaaatatatcccgattagattttttttccctcCCGCCACTACAGTAGTAATGACCTTAAGACGTGTAACTTATATTTATTCTGTGGTAGTCATTTAAATCCAGTTGTTAGCCTTCAATCTGGAAGCGATGGGACTCGTTAAGATCATTTCTGAATGTATTATGTGTTTTAGCCTACACTATGTCTTCGTCTTGATTCCAGCAGATGGGGCAAAACCACCACAAGCTGTGATGCTCGTCTTCGCTTAATGGCTGTCTGCTCAATTTACTCGGTGTGACGTGAAATATCAGTAAAGGCTGAACTAATAATGCATGTTATATAACGGGTGACCTCGGAGAGGAAGAATACTGTAGACCTCAGCATCTTAGTCTGCAAATCccgaagtcatttattttcactttggaTATCGATCCCTTTGACTTTAATTAGCCGAGCcctaggtaaaaaaaaacaacaacatagttTGCTACGATCATTCTTAACAGTATGAGAACACATTCCAGGTGGAATCGAAGGCCCTTAAAGGCTGCAATGTAATTAGCCAATCAGACTGAAGCGACATTACTGCGTAAGTGCATGTGAGTCATTTTACTGTTTCCTATATCTCCTAAAGTTAAACTCTAGATCTTCTAAGCAACACATCGAGGTTATTACAGTACTTGTCTCCATCGGAAAGAAAACGCCTCATGATTTTACGAGCGTTAGGGTCTGTTAGCGTCGACTTAGTGACCCTGACTCTTATTGTAAGACTGTTCTTTAAAGGCAGGGGTCTCTGATGCTAACAGGGGCCAGTGCCAATGATGTGAGGGTACAGATGGCACAACCATGACCTGCCCATGCATTGCACATAGCTGCCGTGATTACCGGATATTACTTTTTCTGACTGTCGGATCTTTCACGTATTGCCTCCAGAATCtcatttctttttcctttcttttgtctGCACTGTACTgtgatttacttttttattgttatgattatACTATTACTCTTGTCCACTGTAATTCCAATTTAAAAgagcaaataaaaatatgtagTTAATTCAAA

Function

symbol description
rab11a Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within Kupffer's vesicle development; angiogenesis; and melanosome transport. Located in recycling endosome. Is expressed in several structures, including blastodisc; brain; caudal vein plexus; digestive system; and pronephric duct. Orthologous to human RAB11A (RAB11A, member RAS oncogene family).

GO:

id name namespace
GO:0006887 exocytosis biological_process
GO:0098887 neurotransmitter receptor transport, endosome to postsynaptic membrane biological_process
GO:0001525 angiogenesis biological_process
GO:0032402 melanosome transport biological_process
GO:0070121 Kupffer's vesicle development biological_process
GO:0001944 vasculature development biological_process
GO:0005768 endosome cellular_component
GO:0098837 postsynaptic recycling endosome cellular_component
GO:0030133 transport vesicle cellular_component
GO:0030424 axon cellular_component
GO:0055037 recycling endosome cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG:

id description
ko04144 Endocytosis
ko04972 Pancreatic secretion
ko04962 Vasopressin-regulated water reabsorption
ko04961 Endocrine and other factor-regulated calcium reabsorption
ko05164 Influenza A
ko04131 Membrane trafficking
ko04147 Exosome
ko04031 GTP-binding proteins

ZFIN:

id description
ZDB-GENE-041114-53 Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within Kupffer's vesicle development; angiogenesis; and melanosome transport. Located in recycling endosome. Is expressed in several structures, including blastodisc; brain; caudal vein plexus; digestive system; and pronephric duct. Orthologous to human RAB11A (RAB11A, member RAS oncogene family).

Ensembl:

ensembl_id ENSDARG00000041450

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025462 True 3232 mRNA 0.44 5 19131773 19139152

Neighbor

gene id symbol gene type direction distance location
XLOC_012754 si:dkey-242h9.3 coding upstream 7461 19120984 ~ 19124312 (+)
XLOC_012753 si:dkey-242h9.5 coding upstream 27809 19101679 ~ 19103964 (+)
XLOC_012751 slc24a1 coding upstream 91813 19006063 ~ 19039960 (+)
XLOC_012752 BX548060.1 coding upstream 98560 19025989 ~ 19033213 (+)
XLOC_012750 hacd3 coding upstream 136490 18982077 ~ 18995283 (+)
XLOC_012756 NA coding downstream 273945 19413097 ~ 19416040 (+)
XLOC_012757 map2k1 coding downstream 279968 19419120 ~ 19451165 (+)
XLOC_012758 zwilch coding downstream 317496 19456648 ~ 19472646 (+)
XLOC_012759 NA coding downstream 385689 19524841 ~ 19620953 (+)
XLOC_012760 smad6b coding downstream 509123 19648275 ~ 19699061 (+)
XLOC_012749 NA non-coding upstream 162007 18968890 ~ 18969766 (+)
XLOC_012748 BX571681.4 non-coding upstream 220158 18910366 ~ 18911615 (+)
XLOC_012745 NA non-coding upstream 303288 18827219 ~ 18828485 (+)
XLOC_012744 NA non-coding upstream 331721 18798840 ~ 18800052 (+)
XLOC_012769 BX890624.2 non-coding downstream 950229 20089381 ~ 20208129 (+)
XLOC_012771 NA non-coding downstream 1177291 20316443 ~ 20325221 (+)
XLOC_012772 NA non-coding downstream 1188967 20328119 ~ 20376935 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000013_04710817_04715966 RAB11B.1.S, RAB25, RAB11B.2.L, RAB11B.2, RAB11B.1, RAB11A, RAB11B, RAB11BA coding CI01000013 null 4710555 ~ 4716196 (-)
bowfin (Amia calva) AMCG00017213 rab43,LOC107700634,LOC107758163,LOC107675972 coding CM030122.1 CM030122.1 50656119 ~ 50663669 (-)