XLOC_012756


Basic Information

Item Value
gene id XLOC_012756
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 19413097 ~ 19416040 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027100
ACGCAGCACGCATGCAGAGCAACGACATCGTTGCTCATACCTGTACCGGACCAGTTTCGACGTTCTGTGGAGTTTTTGAGGGCTTTATACAACGTGCAACACATAGAGATGTCAGAAGCATAAATGACATGATGGCTAGGACATATAGCTGGGGGAGAATGGAAGTGGTTGTCCAGAGCCCAGATGTGCAAAAATTAAAGAAAGATGGCCTGCCCAGATAAATGAAGAATTCCAAAGGTGTACTGGTGTTCCACAAGAATCGGTTTTTATGTCCCAGCTGGACAAATACACTCCAAAACTTCTTGACCTGTTTAGTGCGAAGGGTGCAGCGACTGGTGAAAACATCAGTTGGAGTTATTGGAACTGATACAGGATTCAAGTACCTCTGTGGTGAGGAAGAGAGACGTGGCTCTGAGATGCCTCATTGAATACATGGGAGAGAGTGGGCAAAAGCTGATCTCTGACTACTATGGAAAAACAGAGAGCAGTGTCTATGAAGACTTGAAAATGCGCAATATGCAGATATATATCTGCCGTGTTCCAGATGTGGTGGGCATCATCATTGAGGGCATCCCTGTGCTTACTCGTCTTGGAAACCACGCCAGGGCTATGAACTTGCAGTATCCACCACAACTCAGCAAAACATTTCAGGTGTTTCAAAGACATTTTGTGGGACTTGACACACTGCGTCCAAAGTCTTCCTCCTGATTCATGACACAAAAACTTCtgagttagttaattagttgccGCTCAGAGGTTCTGTTTCTTTGCTTCATCACTTTTGTTCAATGGACAGTTTGACTTGGAACAATGTGGTAGTCACGCACCAACTTCTTCAGTTTCTGGATAAGTCTGCAGCAAATATGGGCATttgatttgcttttgtatatatGGGGCaaagtttgttttgttatgtCAAATGCTGAGATCAGaggcactttatttttttatttcaatgttgTAGTACATATGAAAATGTACTGTACTGTGCAC
>TCONS_00026894
ACGACATCGTTGCTCATACCTGTACCGGACCAGTTTCGACGTTCTGTGGAGTTTTTGAGGGCTTTATACAACGTGCAACACATAGAGATGTCAGAAGCATAAATGACATGATGGCTAGGACATATAGCTGGGGGAGAATGGAAGTGGTTGTCCAGAGCCCAGATGTGCAAAAATTAAAGAAAGATGGCCTGCCCAGGTAAATGATTTATCAATGACATGCTGCTTGGCAAATAATGGTGAACAAAGATGTTTATGTAATGCTAGACACACTTTTTGCTGAACACATACTGAAAATTTTACCTCACATGTTTTATGGAGGATTTCATTACATAGGAATAAAAGGTTGCCAATTCTTTACACATTTGGTTCCAAATAACAGACAAACAATTGATGTATTACAGATAAATGAAGAATTCCAAAGGTGTACTGGTGTTCCACAAGAATCGGTTTTTATGTCCCAGCTGGACAAATACACTCCAAAACTTCTTGACCTGTTTAGTGCGAAGGGTGCAGCGACTGGTGAAAACATCAGTTGGAGTTATTGGAACTGATACAGGATTCAAGTACCTCTGTGGTGAGGAAGAGAGACGTGGCTCTGAGATGCCTCATTGAATACATGGGAGAGAGTGGGCAAAAGCTGATCTCTGACTACTATGGAAAAACAGAGAGCAGTGTCTATGAAGACTTGAAAATGCGCAATATGCAGATATATATCTGCCGTGTTCCAGATGTGGTGGGCATCATCATTGAGGGCATCCCTGTGCTTACTCGTCTTGGAAACCACGCCAGGGCTATGAACTTGCAGTATCCACCACAACTCAGCAAAACATTTCAGGTGTTTCAAAGACATTTTGTGGGACTTGACACACTGCGTCCAAAGTCTTCCTCCTGATTCATGACACAAAAACTTCtgagttagttaattagttgccGCTCAGAGGTTCTGTTTCTTTGCTTCATCACTTTTGTTCAATGGACAGTTTGACTTGGAACAATGTGGTAGTCACGCACCAACTTCTTCAGTTTCTGGATAAGTCTGCAGCAAATATGGGCATttgatttgcttttgtatatatGGGGCaaagtttgttttgttatgtCAAATGCTGAGATCAGaggcactttatttttttatttcaatgttgTAGTACATATGAAAATGTACTGTACTGTGCAC
>TCONS_00026895
TGATCCTGATGTTTACCTAAACTCTTCTTTTAATTTGTGTTGCTTTTTTAGAGAGATGTCAGAAGCATAAATGACATGATGGCTAGGACATATAGCTGGGGGAGAATGGAAGTGGTTGTCCAGAGCCCAGATGTGCAAAAATTAAAGAAAGATGGCCTGCCCAGATAAATGAAGAATTCCAAAGGTGTACTGGTGTTCCACAAGAATCGGTTTTTATGTCCCAGCTGGACAAATACACTCCAAAACTTCTTGACCTGTTTAGTGCGAAGGGTGCAGCGACTGGTGAAAACATCAGTTGGAGTTATTGGAACTGATACAGGATTCAAGTACCTCTGTGGTGAGGAAGAGAGACGTGGCTCTGAGATGCCTCATTGAATACATGGGAGAGAGTGGGCAAAAGCTGATCTCTGACTACTATGGAAAAACAGAGAGCAGTGTCTATGAAGACTTGAAAATGCGCAATATGCAGATATATATCTGCCGTGTTCCAGATGTGGTGGGCATCATCATTGAGGGCATCCCTGTGCTTACTCGTCTTGGAAACCACGCCAGGGCTATGAACTTGCAGTATCCACCACAACTCAGCAAAACATTTCAGGTGTTTCAAAGACATTTTGTGGGACTTGACACACTGCGTCCAAAGTCTTCCTCCTGATTCATGACACAAAAACTTCtgagttagttaattagttgccGCTCAGAGGTTCTGTTTCTTTGCTTCATCACTTTTGTTCAATGGACAGTTTGACTTGGAACAATGTGGTAGTCACGCACCAACTTCTTCAGTTTCTGGATAAGTCTGCAGCAAATATGGGCATttgatttgcttttgtatatatGGGGCaaagtttgttttgttatgtCAAATGCTGAGATCAGaggcactttatttttttatttcaatgttgTAGTACATATGAAAATGTACTGTACTGTGCACTTAAGCTAGTCTGTTTATGTAAATTGCTCAGGTCAAGATTCACTGTATTTTATTGTTAGTGTACAGATTGCATTTAAAGGTCTTCTATGCTGCGCTTAAAGATGAGGTTAgaagtttctgtaatttttaatgttaatgtttacaacattaacaataaaattgatTATAGAAACTTTTGATTATAAATTGATAATAAGTGCACCCAGTTGTTTGTGTATGGCAAATGTTAG
>TCONS_00026896
TACGTTTGTAGTTATATTGCCTGCAATATTCAGTTTTTTCATTATTCACTTACCAACTATAGGATTCAAGTACCTCTGTGGTGAGGAAGAGAGACGTGGCTCTGAGATGCCTCATTGAATACATGGGAGAGAGTGGGCAAAAGCTGATCTCTGACTACTATATGTGGTGGGCATCATCATTGAGGGCATCCCTGTGCTTACTCGTCTTGGAAACCACGCCAGGGCTATGAACTTGCAGTATCCACCACAACTCAGCAAAACATTTCAGGTGTTTCAAAGACATTTTGTGGGACTTGACACACTGCGTCCAAAGTCTTCCTCCTGATTCATGACACAAAAACTTCtgagttagttaattagttgccGCTCAGAGGTTCTGTTTCTTTGCTTCATCACTTTTGTTCAATGGACAGTTTGACTTGGAACAATGTGGTAGTCACGCACCAACTTCTTCAGTTTCTGGATAAGTCTGCAGCAAATATGGGCATttgatttgcttttgtatatatGGGGCaaagtttgttttgttatgtCAAATGCTGAGATCAGaggcactttatttttttatttcaatgttgTAGTACATATGAAAATGTACTGTACTGTGCAC

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0034720 histone H3-K4 demethylation biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0071840 cellular component organization or biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0070544 histone H3-K36 demethylation biological_process
GO:0071599 otic vesicle development biological_process
GO:0006396 RNA processing biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0042471 ear morphogenesis biological_process
GO:0042472 inner ear morphogenesis biological_process
GO:0006412 translation biological_process
GO:0006413 translational initiation biological_process
GO:0072175 epithelial tube formation biological_process
GO:0043933 protein-containing complex subunit organization biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0006518 peptide metabolic process biological_process
GO:0035148 tube formation biological_process
GO:0034622 cellular protein-containing complex assembly biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0071013 catalytic step 2 spliceosome cellular_component
GO:0030684 preribosome cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0005685 U1 snRNP cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043233 organelle lumen cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005730 nucleolus cellular_component
GO:0008135 translation factor activity, RNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030515 snoRNA binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko04623 Cytosolic DNA-sensing pathway
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027100 False 993 lncRNA 0.43 5 19413097 19415810
TCONS_00026894 False 1177 lncRNA 0.41 4 19413118 19415810
TCONS_00026895 False 1170 lncRNA 0.39 4 19413824 19416040
TCONS_00026896 True 610 lncRNA 0.40 2 19414777 19415810

Neighbor

gene id symbol gene type direction distance location
XLOC_012755 rab11a coding upstream 273945 19131773 ~ 19139152 (+)
XLOC_012754 si:dkey-242h9.3 coding upstream 288785 19120984 ~ 19124312 (+)
XLOC_012753 si:dkey-242h9.5 coding upstream 309133 19101679 ~ 19103964 (+)
XLOC_012751 slc24a1 coding upstream 373137 19006063 ~ 19039960 (+)
XLOC_012752 BX548060.1 coding upstream 379884 19025989 ~ 19033213 (+)
XLOC_012757 map2k1 coding downstream 3080 19419120 ~ 19451165 (+)
XLOC_012758 zwilch coding downstream 40608 19456648 ~ 19472646 (+)
XLOC_012759 NA coding downstream 108801 19524841 ~ 19620953 (+)
XLOC_012760 smad6b coding downstream 232235 19648275 ~ 19699061 (+)
XLOC_012761 smad3b coding downstream 356834 19772874 ~ 19806209 (+)
XLOC_012749 NA non-coding upstream 443331 18968890 ~ 18969766 (+)
XLOC_012748 BX571681.4 non-coding upstream 501482 18910366 ~ 18911615 (+)
XLOC_012745 NA non-coding upstream 584612 18827219 ~ 18828485 (+)
XLOC_012744 NA non-coding upstream 613045 18798840 ~ 18800052 (+)
XLOC_012769 BX890624.2 non-coding downstream 673341 20089381 ~ 20208129 (+)
XLOC_012771 NA non-coding downstream 900403 20316443 ~ 20325221 (+)
XLOC_012772 NA non-coding downstream 912079 20328119 ~ 20376935 (+)
XLOC_012781 BX548061.1 non-coding downstream 1605659 21021699 ~ 21023601 (+)
XLOC_012743 NA non-coding upstream 600189 18740827 ~ 18812908 (+)

Expression


Co-expression Network