CI01000306_05555926_05562924 (XK)


Basic Information

Item Value
gene id CI01000306_05555926_05562924
gene name XK
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000306
NCBI id null
chromosome length 11491657
location 5555926 ~ 5562949 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000306_05555926_05562924.mRNA
AGAAAAGCAACATGGCTGAGTGAGGATGAGACTACCCAGCTCTGTCCTTGTGTCGGTCTCTTTGTTTACGGCCGAGACGACGGCTGCTCTGTATCTGAGCAGCACTTATCGCTCCGCTGGTGATCAGATTTGGCAGTGTTTCACGCTCCTCTTCACGCTTGTGCCATCCGTGCTGGTGCAGCTCACACTGATCTTTATTCACAGAGACCTGAGCAGAGACAGACCTCTAGTACTACTGCTTCATATATTACAACTAGGACCAATAATAAGGTGCCTGGATGCCTTCTGTATCTATGGCAGTGCTGGAAAGGTGGAGGAGCCATATGTCACCATCACCCGTAAGAAGCAGATACCCCGGGAAGGGCAGACCGAGGAGGTGGAGCAAGAAGTGGGACAGGCGGAGGGAAAGTTAGTTACGCACAGAGCTGCTTTCGCCAGGACCTCGGTCATACAGGCCTTCCTGGGCTCTGCACCCCAGCTCACACTGCAGCTTTACATCTGTGTGCTGCAGAGAGCAGTGTCCATCGGTAGAGGCACATTGATGGTCATTTCCCTTCTCTCAATTGTATATGGAGCCCTACGCTGCAATATTCTCGCCATAAAGATACGCTATGATGATTACGAAGTGTCCGTGCGTCCATTGGCATACCTGTGCGTGTTCCTGTGGAGAGGGTTCGAGATCGCCACTCGCGTGACCGTGCTGGTCCTCTTCAGCTCAGTGCTGAAGGTGTGGGTGCTTCCGGTGGTATCAGTCAACTTCGTCCTGTTCTTTCTTCGCCCGTGGGTTCTCTTCTGGAGCAGCCGTTCCCCGTTCCCGGAGAACATCGAGAAGACGTTGACGCGTGTGGGGACCACCATCGTCCTCTGCTTGCTGACATTCCTGTACGCTGGAATCAACGTGTTCTGCTGGTCCGCTGTTCAGCTCAGACTGGACGACCCCGATCTGATCGATAAGGGTCAGGCATGGAGGCGGGTGGCAGTGTATTATTCCCTCCGTTTTGTCGAAAACACTGTGCTGACTTTGATGTGGTACGTCTACCGGACTGAATTTTACCAATGGGTGGATGCTCCCGTGTTAGAAATACTGCTGTTGTTGGGTTACGCCACCGCTGTGTTTTTTATGTTGCTCTTTTACCAGTTCTGCCACCCTTGCAGGCAACTGTTCTCATCCAGTCCAGCCCAGGGTTTTGGGGAGTGCTGTGGATCTCTCTGCCTGCCAGGTGGGACTCTTTCCCAGCCAGGCTCCATAAGGACCAAACCAGCAGGGAAAGACATTGGAGACGATCCACCCTGTGTTACCAAAGGGGACATCGGGCAGAGTTTATGTGGCACCGTATGA

Function

symbol description
xk Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in McLeod syndrome and hematopoietic system disease. Orthologous to human XK (X-linked Kx blood group).

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K19522 XK; membrane transport protein XK

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000306_05555926_05562924.mRNA True 1339 mRNA 0.53 3 5555926 5562949

Neighbor

gene id symbol gene type direction distance location
CI01000306_05544881_05552941 CYBB, GP91PHOX coding downstream 2985 5544512 ~ 5552941 (-)
CI01000306_05520026_05523437 PLEKHA3 coding downstream 32489 5519992 ~ 5523437 (-)
CI01000306_05506906_05508492 NA coding downstream 47269 5506132 ~ 5508657 (-)
CI01000306_05476895_05478400 NR0B1 coding downstream 77361 5476396 ~ 5478565 (-)
CI01000306_05452986_05453456 RPL22 coding downstream 102470 5452864 ~ 5453456 (-)
CI01000306_05606914_05611346 FIGF, VEGFD coding upstream 43656 5606605 ~ 5611346 (-)
CI01000306_05619706_05631189 PIR coding upstream 56687 5619636 ~ 5631189 (-)
CI01000306_05631903_05640235 NA coding upstream 68784 5631733 ~ 5640235 (-)
CI01000306_05664945_05673274 ACE2 coding upstream 101996 5664945 ~ 5673298 (-)
CI01000306_05732360_05733779 NA coding upstream 168334 5731283 ~ 5735848 (-)
G433550 NA non-coding downstream 29574 5525168 ~ 5526352 (-)
G433527 NA non-coding downstream 37547 5517830 ~ 5518379 (-)
G433541 NA non-coding downstream 56352 5499341 ~ 5499574 (-)
G433539 NA non-coding downstream 57742 5497974 ~ 5498184 (-)
G433518 NA non-coding upstream 469 5563418 ~ 5563669 (-)
G433561 NA non-coding upstream 4966 5567915 ~ 5590563 (-)
G433583 NA non-coding upstream 110463 5673412 ~ 5673651 (-)
G433595 NA non-coding upstream 195249 5758198 ~ 5815869 (-)
G433617 NA non-coding upstream 224784 5787733 ~ 5788071 (-)
G433450 NA other downstream 172163 5361643 ~ 5383763 (-)
CI01000306_04544349_04545034 NA other downstream 1010834 4542723 ~ 4545244 (-)
G432022 NA other downstream 2552035 3000236 ~ 3003891 (-)
CI01000306_01723684_01726043 MAFGA, MAFGB, MAFG other downstream 3806976 1717933 ~ 1726043 (-)
G431814 NA other downstream 4243492 1311702 ~ 1312434 (-)
G433670 NA other upstream 478065 6041014 ~ 6041283 (-)
G433985 NA other upstream 633158 6196107 ~ 6197210 (-)
G434016 NA other upstream 792231 6355180 ~ 6361643 (-)
G434086 NA other upstream 874457 6437406 ~ 6452251 (-)
G434338 NA other upstream 1303707 6866656 ~ 6866936 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_004195 cybb coding NC_007122.7 CM002895.2 29795155 ~ 29833698 (-)
bowfin (Amia calva) AMCG00014282 xk coding CM030128.1 CM030128.1 7645418 ~ 7653546 (+)