XLOC_012769 (BX890624.2)


Basic Information

Item Value
gene id XLOC_012769
gene name BX890624.2
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 20089381 ~ 20208129 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025481
TATAATCATTAAAGTGTGGTATATATAATCATTAAAGTGTGGTTATAAAGGTcaatttttttgagaaaaaaaagaacaacccctttcaccaggctggctacgggacCTTACTCTCACGCTTTCACAAATTGGAGTCCAAATGACGACGAACGATACACGTTAACCAATGAGGTTTGTATTCAGCTTTGTCCTCGCTTTTTCTCTTATATGGTGTTTGGCGCACTCTCTTTTTGTAAACAAAAGGAGTAGGTCGTTGCCATTTGCGCGCCGTATTTGCATTGATGACAATTTCAAGTCAGCAGTGCCTTAATTATTCAAACAAAACTATAGATTAGACGAAGAAGGCTTGAAATACAGCACTCAAATCAGATTGATTTCATGGCCCTTTATGTAGTCCTTGTGTTTCCCACGTGAAAGgggaAAGTCATGAAGGTGATGgaatgatgacagcattttcacTTTTCTGCTCCTCTTTGTGAACTATGCCACACATCTACCCTTCAGTTCTTTCATAAAGTGTATTGGCCTCCAGACTCTTCTGATCCAGTTTCTAGTGATACATCGCACCGGCGTTCGCGTGGCGGCACAGTCATTAGGCAAAAGTGGCGGTAATATCACAGGCCTGGAATGTCGGCCCACGTATTTGGAGCTGCATGAAAATGTTTTGGACCACGACTGCGAATCCTGCCTGCCACACGTCATCAAAGCCTCTAATGTTGGCTGGCTTAGGCGTGCACACTGTAGCAGGTACACTGTGCTCTTTGTTTACCCTCTTCTTTTACCAATCTGGTGCACAGATGGCTAACAATTATT
>TCONS_00027103
ATTGATGACAATTTCAAGTCAGCAGTGCCTTAATTATTCAAACAAAACTATAGATTAGACGAAGAAGGCTTGAAATACAGCACTCAAATCAGATTGATTTCATGGCCCTTTATGTAGTCCTTGTGTTTCCCACGTGAAAGgggaAAGTCATGAAGGTGATGgaatgatgacagcattttcacTTTTCTGCTCCTCTTTGTGAACTATGCCACACATCTACCCTTCAGTTCTTTCATAAAGTGTATTGGCCTCCAGACTCTTCTGATCCAGTTTCTGTGAGTCACATCTCTGTAATTACAATCCGTTTCATCAGACCTTCTACAAAACCTCATCCGTGTTGTTTAAAGTGAAGGGATCAGACTGCCC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000117246

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025481 False 813 lncRNA 0.43 3 20089381 20208129
TCONS_00027103 True 366 lncRNA 0.40 2 20089658 20091342

Neighbor

gene id symbol gene type direction distance location
XLOC_012768 uacaa coding upstream 6504 20047374 ~ 20082877 (+)
XLOC_012767 morf4l1 coding upstream 44074 20034023 ~ 20045307 (+)
XLOC_012766 rxfp3.3a3 coding upstream 57292 20031046 ~ 20032089 (+)
XLOC_012765 pias1b coding upstream 64017 19990412 ~ 20025364 (+)
XLOC_012764 skor1b coding upstream 106727 19972853 ~ 19982654 (+)
XLOC_012770 tle3a coding downstream 17832 20225961 ~ 20257511 (+)
XLOC_012771 NA coding downstream 108314 20316443 ~ 20325221 (+)
XLOC_012772 NA coding downstream 119990 20328119 ~ 20376935 (+)
XLOC_012773 ddb2 coding downstream 260028 20468157 ~ 20492059 (+)
XLOC_012774 rapsn coding downstream 286284 20494413 ~ 20511015 (+)
XLOC_012759 NA non-coding upstream 468428 19524841 ~ 19620953 (+)
XLOC_012756 NA non-coding upstream 673341 19413097 ~ 19416040 (+)
XLOC_012752 BX548060.1 non-coding upstream 1056168 19025989 ~ 19033213 (+)
XLOC_012749 NA non-coding upstream 1119615 18968890 ~ 18969766 (+)
XLOC_012748 BX571681.4 non-coding upstream 1177766 18910366 ~ 18911615 (+)
XLOC_012781 BX548061.1 non-coding downstream 813570 21021699 ~ 21023601 (+)
XLOC_012786 NA non-coding downstream 955295 21163424 ~ 21169748 (+)
XLOC_012787 BX571884.1 non-coding downstream 983536 21191665 ~ 21191784 (+)

Expression


Co-expression Network