XLOC_012777 (bida)


Basic Information

Item Value
gene id XLOC_012777
gene name bida
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 20566817 ~ 20573129 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025497
ACTAGACTCCCCGCTGCACTTGGCTTGTTGTTTATTGCGTTGCGTGTTGATTATGCTTCCCTGTTTGTATTCAAAGTTTACAGCACCTGTATGAGACATTGTACAGGCCTGCTCGATGGACTTCAACAGGAACTTTGACCATATTCCACATACATCTCTGGTGCTCCTTTCCTTTCTTGACCAGAAAGACTGCCAAAATGGTGAATCGGGAAGGGTCTTTGATTATCGTGAAGATAACCTGTCTACAAATCATATTGACAGTGATGGGGATATAGAAACCGACGGACAAAGTCCACCAGCGACCTACAGAGACCTTTTACATGAACTACAGCATGAAGTTCAGCCTGGTCTTTCAGTCAATGCAGAAGAGGCTCGAGCTGCGAGAGAAATGGCGGCAGAGTTGATCAGAATAGCAGATCTTCTGGAGCAGAGCGTTCTGTCTCAAGCTGCTGAGAGTCTGACTAAAAAACTGAGATCTTCCCAAGAACAGGTTTGGGCCAGTCATCTATCTAAAGGAGTGCAGACGTTACTTCAGCATGTGGCAGCAGCCAAAGAGTTTAAGAAGGAGCTTGTGGAGATGGCCTTCACGTTCATGCTCATGAAGACTGTTTGTGAACGCACACCTGATTTTCTGTTTGGCCTTTATGGGACAGTGGTGCAGTTTTTCGGATCCAACTGATCCCCGATGAAATCTGATGAGCAGTTAGAGAAGTGAAGgatttgaagaaaaaaagataCGTTCAAACATGGTTTGATAATACAAATGTCAATTAATTCAGCTTTTTAAAACTGAATACGTTTGATTTTGTAGCTGTTATTcattgtgtttgttgttgttgttctccaTGACATTGGGTTTTTTGTtcattgtgtatataaataaataaatgtaagaaaACATGTCTGCTTTATTCATC
>TCONS_00025498
GTTTATTGCGTTGCGTGTTGATTATGCTTCCCTGTTTGTATTCAAAGTTTACAGCACCTGTATGAGACATTGTACAGGCCTGCTCGATGGACTTCAACAGGAACTTTGACCATATTCCACATACATCTCTGGTGCTCCTTTCCTTTCTTGACCAGAAAGACTGCCAAAATGGTGAATCGGGAAGGGTCTTTGATTATCGTGAAGATAACCTGTCTACAAATCATATTGACAGTGATGGGGATATAGAAACCGACGGACAAAGTCCACCAGCGACCTACAGAGACCTTTTACATGAACTACAGCATGAAGTTCAGCCTGGTCTTTCAGTCAATGCAGAAGAGGCTCGAGCTGCGAGAGAAATGGCGGCAGAGTTGATCAGAATAGCAGATCTTCTGGAGCAGAGCGTTCTGTCTCAAGCTGCTGAGAGTCTGACTAAAAAACTGAGATCTTCCCAAGAACAGGTCTGTCAGATTGCTAAACTGTACGCATTTCTGATGGCTTTACGCGAATGGTTCCTCCATTTAAATAGTATCACTTGCATATTTTCAGGTTTGGGCCAGTCATCTATCTAAAGGAGTGCAGACGTTACTTCAGCATGTGGCAGCAGCCAAAGAGTTTAAGAAGGAGCTTGTGGAGATGGCCTTCACGTTCATGCTCATGAAGACTGTTTGTGAACGCACACCTGATTTTCTGTTTGGCCTTTATGGGACAGTGGTGCAGTTTTTCGGATCCAACTGATCCCCGATGAAATCTGATGAGCAGTTAGAGAAGTGAAGgatttgaagaaaaaaagataCGTTCAAACATGGTTTGATAATACAAATGTCAATTAATTCAGCTTTTTAAAACTGAATACGTTTGATTTTGTAGCTGTTATTcattgtgtttgttgttgttgttctccaTGACATTGGGTTTT
>TCONS_00025499
AGCACCTGTATGAGACATTGTACAGGCCTGCTCGATGGACTTCAACAGGAACTTTGACCATATTCCACATACATCTCTGGTGCTCCTTTCCTTTCTTGACCAGAAAGACTGCCAAAATGGTGAATCGGGAAGGGTCTTTGATTATCGTGAAGATAACCTGTCTACAAATCATATTGACAGTGATGGGGATATAGAAACCGACGGACAAAGTCCACCAGCGACCTACAGAGACCTTTTACATGAACTACAGCATGAAGTTCAGCCTGGTCTTTCAGTCAATGCAGAAGAGGCTCGAGCTGCGAGAGAAATGGCGGCAGAGTTGATCAGAATAGCAGATCTTCTGGAGCAGAGCGTTCTGTCTCAAGCTGCTGAGAGTCTGACTAAAAAACTGAGATCTTCCCAAGAACAGGTTTGGGCCAGTCATCTATCTAAAGGAGTGCAGACGTTACTTCAGCATGTGGCAGCAGCCAAAGAGTTTAAGAAGGAGCTTGTGGAGATGGCCTTCACGTTCATGCTCATGAAGACTGTTTGTGAACGCACACCTGATTTTCTGTTTGGCCTTTATGGGACAGTGGTGCAGTTTTTCGGATCCAACTGATCCCCGATGAAATCTGATGAGCAGTTAGAGAAGTGAAGgatttgaagaaaaaaagataCGTTCAAACATGGTTTGATAATACAAATGTCAATTAATTCAGCTTTTTAAAACTGAATACGTTTGATTTTGTAGCTGTTATTcattgtgtttgttgttgttgttctccaTGACATTGGGTTTTTTGTtcattgtgtatataaataaataaatgtaagaaaACATGTCTGCTTTATTCATCTCAGCTTTGGTTACTTAGtatttttgtgctgtattttcagtgttttattgTCGGCTTTACTTGTATTGAAACCTCTGGCAACTTTTTTGTATGGAGGTCAAGCTGAAAAAATATTGTATACTATTCCTTCTATGCTAAATGAAGGACtcctgagacattccaagcatgggatgggtcctcctggtgagttcctcacagctcctatacacatctctgccatttccTTACTgtaaccatgtgctcttcaccatacacaatcTGCTCGTGATCTTCCTTCGGATaattttgtcatgtttggtgtcatatgacagttttcagtgttgtagtgatgaaatcaacagagacattgattaattATATTTCAATCTACATTATATTTACTATTGCTGAGTCATGACCttaggagagtatgttaatgttcttctCCCCCACTTTATCTCTTCAACTTTTCTCTCACGTTCAGCTGGTCTTGGGGGTTAGTTTTCACTCATGtctgacaatgctttgctcagggtataaggaaaggtaactgttgatctgggagaatggcttttactctgcatctcccgcataccagtgcgtagcctcatatgctaacaaaggcagtttcactgtgttgctcagcagtgcatatgttacagctaatttcttaatacagtatgttagtttgtgcCATTataatgtctgtatatttaaacatgtaacttaataaacaactttgcctgctttaagacgtag

Function

symbol description
bida Acts upstream of or within positive regulation of apoptotic process. Predicted to be located in mitochondrial outer membrane. Predicted to be active in cytosol and mitochondrion. Is expressed in several structures, including brain; digestive system; eye; heart; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human BID (BH3 interacting domain death agonist).

GO:

id name namespace
GO:0042981 regulation of apoptotic process biological_process
GO:0006919 activation of cysteine-type endopeptidase activity involved in apoptotic process biological_process
GO:2001238 positive regulation of extrinsic apoptotic signaling pathway biological_process
GO:2001244 positive regulation of intrinsic apoptotic signaling pathway biological_process
GO:0043065 positive regulation of apoptotic process biological_process
GO:0008637 apoptotic mitochondrial changes biological_process
GO:0090200 positive regulation of release of cytochrome c from mitochondria biological_process
GO:0005829 cytosol cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005739 mitochondrion cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-35 Acts upstream of or within positive regulation of apoptotic process. Predicted to be located in mitochondrial outer membrane. Predicted to be active in cytosol and mitochondrion. Is expressed in several structures, including brain; digestive system; eye; heart; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in pancreatic cancer. Orthologous to human BID (BH3 interacting domain death agonist).

Ensembl:

ensembl_id ENSDARG00000069290

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025497 False 917 mRNA 0.42 4 20566817 20572391
TCONS_00025498 False 919 lncRNA 0.42 3 20566846 20572334
TCONS_00025499 True 1574 mRNA 0.40 3 20567542 20573129

Neighbor

gene id symbol gene type direction distance location
XLOC_012776 wee2 coding upstream 835 20560442 ~ 20565982 (+)
XLOC_012775 agk coding upstream 26108 20532618 ~ 20540709 (+)
XLOC_012774 rapsn coding upstream 55802 20494413 ~ 20511015 (+)
XLOC_012773 ddb2 coding upstream 74758 20468157 ~ 20492059 (+)
XLOC_012772 NA coding upstream 189882 20328119 ~ 20376935 (+)
XLOC_012778 cftr coding downstream 103961 20677090 ~ 20722810 (+)
XLOC_012779 ttc23 coding downstream 252246 20825375 ~ 20853748 (+)
XLOC_012780 pgpep1l coding downstream 296794 20869923 ~ 20875997 (+)
XLOC_012781 BX548061.1 coding downstream 448570 21021699 ~ 21023601 (+)
XLOC_012782 fam169b coding downstream 488087 21061216 ~ 21063379 (+)
XLOC_012771 NA non-coding upstream 241596 20316443 ~ 20325221 (+)
XLOC_012769 BX890624.2 non-coding upstream 358688 20089381 ~ 20208129 (+)
XLOC_012759 NA non-coding upstream 945864 19524841 ~ 19620953 (+)
XLOC_012756 NA non-coding upstream 1150777 19413097 ~ 19416040 (+)
XLOC_012786 NA non-coding downstream 590295 21163424 ~ 21169748 (+)
XLOC_012787 BX571884.1 non-coding downstream 618536 21191665 ~ 21191784 (+)
XLOC_012790 NA non-coding downstream 896507 21469636 ~ 21473364 (+)
XLOC_012792 CT573204.1 non-coding downstream 1505015 22078144 ~ 22081753 (+)

Expression


Co-expression Network