XLOC_012779 (ttc23)


Basic Information

Item Value
gene id XLOC_012779
gene name ttc23
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 20825375 ~ 20853748 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025501
TaggaatcagccaatcacagcgtTTGTTTGGGTTTCGTGATAGTCGTTTCTCGGTTGCACAGGCACAGCTCTGACTTCCAGTGTGCCTGAAAAGATCGTTGCAGTCTTTGAAGAGCAATATAAAAGAGAAATCATTCTTACCATCAATCAAAAGCCGGCTTGTACTGTAATTTGACTGCTCAGTGTCATTTGCCTTCGCCATTAAAATGAGCCTGGCACCGCACAGCGGACCGTTTGGCGCATCACAGCAGGACTGCTCAGTCACTGCGCTGGATGAATCATTCACCAGCTTCAACATGAGCAGCAGTGGCAGTTCTGGAGAATACCTTCAGGAAGCAGATTCAACAATAATCTCACAGAAAGAAGATGGAAAGAATTACAGCATGATTACTCCTGCAGAGAAACTATCTCTTTGTGAGAGACGGGCTCATTCTTTTGCTGATAGTGAAGAGTATGACCCATGTATCCAAGAGCTTATCCGCTGCCTGGCACTGAGCAGACTGGTTTATGGAAATGAGCATTTTGCAGTGGCCCAAGCCCAGTCAAGACTAGCTAAAGCTTACTTGCAATACAAAGGATGGGCACATCAAGCACAGGAACATGCATCGCAAGCACATGAAGTACTCAGTTTGTGTCAGCAGGAGGAGAGATTGAGCTGCCTTAACTGCTTTCTTTCCATACATCAAACTCATGGAAGTGCTGCTCTGCATCTTGGAAATTTAGCAGAAGCCGAGTCAAGCTTTCAGAAGGCAGAGATCGTCTTAGGAGACATAGTAGCACAAGAAGCCACTGGAAAGGAGGACAGACTGGCCACGGAGtatgaaatatttacaaatttagcAAGGGTGTACCAGCGGCAGGGAAGGCCAGAGAAGGCCCTCAGCCAGTTTGAAAGAACCCTGGAGCTGCTTCATCAGGAAGAACAGCTCAGTCGAATCTGCTTTGTTTATAGAAACATGGCAGCCATTGAACAGACTCAGGGGCATCTGGATAGTGCCATTGAACATCTCCTGAAGGCTCATTCCATTGCTGTTAGTCAGAGTGCTGGAGGTCTGGAAGGGGCTCAGATCACTCACAGTTTGGCTCTGGCCTATTCCTCCACTTCAGAGCCTCAACACAATGTAGATTTAGCAGCACGGTATTTTGAAGAGAGTATAAGTGCATATAGAAGTGCACTCGGCCCACAGGACAAACTCACACTGTCTGCTCAAGACGACTTCAGTCATTTTCTCCTACTCACAGGACAACACGAGAGATGTGCTGAGATCCAGAGAGAGTCTCTGTCCCTGAAGAAGAGCACGTTTGGTGAGCTCAGCACTGAGGTAGCAGAAACGctgcagctgattggtggagtggagaTGACACAGGGTCACATGAGACACGCCCACCGGACACTCAAGAAGtgttttgaaATTCAGAGTCTGCTGTATGGTCCTCAGCACAAGAAAACCAAAGCCACTCAAAGAAGCGTGGACATGCTGTCTCAGTCGCCAGAGGTGAGTGAGAAACGTAAAGCAAGCCGCGTTGAAACAAGGCCTCCGTTCTGTGCAGTGGTTGCATCTGCATCTGAGGTGACATCTAGTCTGTCTAACTCGTAA
>TCONS_00025502
TCGTTTCTCGGTTGCACAGGCACAGCTCTGACTTCCAGTGTGCCTGAAAAGATCGTTGCAGTCTTTGAAGAGCAATATAAAAGAGAAATCATTCTTACCATCAATCAAAAGCCGGCTTGTACTGTAATTTGACTGCTCAGTGTCATTTGCCTTCGCCATTAAAATGAGCCTGGCACCGCACAGCGGACCGTTTGGCGCATCACAGCAGGACTGCTCAGTCACTGCGCTGGATGAATCAACTTTTGCAGATTCACCAGCTTCAACATGAGCAGCAGTGGCAGTTCTGGAGAATACCTTCAGGAAGCAGATTCAACAATAATCTCACAGAAAGAAGATGGAAAGAATTACAGCATGATTACTCCTGCAGAGAAACTATCTCTTTGTGAGAGACGGGCTCATTCTTTTGCTGATAGTGAAGAGTATGACCCATGTATCCAAGAGCTTATCCGCTGCCTGGCACTGAGCAGACTGGTTTATGGAAATGAGCATTTTGCAGTGGCCCAAGCCCAGTCAAGACTAGCTAAAGCTTACTTGCAATACAAAGGATGGGCACATCAAGCACAGGAACATGCATCGCAAGCACATGAAGTACTCAGTTTGTGTCAGCAGGAGGAGAGATTGAGCTGCCTTAACTGCTTTCTTTCCATACATCAAACTCATGGAAGTGCTGCTCTGCATCTTGGAAA
>TCONS_00025503
TCGTTTCTCGGTTGCACAGGCACAGCTCTGACTTCCAGTGTGCCTGAAAAGATCGTTGCAGTCTTTGAAGAGCAATATAAAAGAGAAATCATTCTTACCATCAATCAAAAGCCGGCTTGTACTGTAATTTGACTGCTCAGTGTCATTTGCCTTCGCCATTAAAATGAGCCTGGCACCGCACAGCGGACCGTTTGGCGCATCACAGCAGGACTGCTCAGTCACTGCGCTGGATGAATCATTCACCAGCTTCAACATGAGCAGCAGTGGCAGTTCTGGAGAATACCTTCAGGAAGCAGATTCAACAATAATCTCACAGAAAGAAGATGGAAAGAATTACAGCATGATTACTCCTGCAGAGAAACTATCTCTTTGTGAGAGACGGGCTCATTCTTTTGCTGATAGTGAAGAGTATGACCCATGTATCCAAGAGCTTATCCGCTGCCTGGCACTGAGCAGACTGGTTTATGGAAATGAGCATTTTGCAGTGGCCCAAGCCCAGTCAAGACTAGCTAAAGCTTACTTGCAATACAAAGGATGGGCACATCAAGCACAGGAACATGCATCGCAAGCACATGAAGTACTCAGTTTGTGTCAGCAGGAGGAGAGATTGAGCTGCCTTAACTGCTTTCTTTCCATACATCAAACTCATGGAAGTGCTGCTCTGCATCTTGGAAATTTAGCAGAAGCCGAGTCAAGCTTTCAGAAGGCAGAGATCGTCTTAGGAGACATAGTAGCACAAGAAGCCACTGGAAAGGAGGACAGACTGGCCACGGAGtatgaaatatttacaaatttagcAAG
>TCONS_00025504
GGTGTACCAGCGGCAGGGAAGGCCAGAGAAGGCCCTCAGCCAGTTTGAAAGAACCCTGGAGCTGCTTCATCAGGAAGAACAGCTCAGTCGAATCTGCTTTGTTTATAGAAACATGGCAGCCATTGAACAGACTCAGGGGCATCTGGATAGTGCCATTGAACATCTCCTGAAGGCTCATTCCATTGCTGTTAGTCAGAGTGCTGGAGGTCTGGAAGGGGCTCAGATCACTCACAGTTTGGCTCTGGCCTATTCCTCCACTTCAGAGCCTCAACACAATGTAGATTTAGCAGCACGGTATTTTGAAGAGAGTATAAGTGCATATAGAAGTGCACTCGGCCCACAGGACAAACTCACACTGTCTGCTCAAGACGACTTCAGTCATTTTCTCCTACTCACAGGACAACACGAGAGATGTGCTGAGATCCAGAGAGAGTCTCTGTCCCTGAAGAAGAGCACGTTTGGTGAGCTCAGCACTGAGGTAGCAGAAACGctgcagctgattggtggagtggagaTGACACAGGGTCACATGAGACACGCCCACCGGACACTCAAGAAGtgttttgaaATTCAGAGTCTGCTGTATGGTCCTCAGCACAAGAAAACCAAAGCCACTCAAAGAAGCGTGGACATGCTGTCTCAGTCGCCAGAGGTGAGTGAGAAACGTAAAGCAAGCCGCGTTGAAACAAGGCCTCCGTTCTGTGCAGTGGTTGCATCTGCATCTGAGGTGACATCTAGTCTGTCTAACTCGTAACAACAGTGACCAGCAGGCTGATCTAATGAATGCGGCATAGGCTGTCAAGGATGTTTGACCTCATCCTTTTTCACCCAGGGAAATCTGTGGGCTGGAAAAGAATAAGGCAATATTCCTCGAACAGCACACAAgctctgctgtgtctttaatgtgaGTTGCTGAGTCTCAAAGTGGTTGGCAAGGTGACTATATCTCCAGTTCAGAAAATGAGAACGTCCAACAGTGATCTAATACACCGTCACAGTGGTTTTCTGCAAACACTCCTTGACTAGAGAGTTTTCTTATTTCTGAGAATTGCTGAAATGTGTGAgaaatgtgtgtgaaatgtgagctttcagggtttatttattgtttgcatatAAACCAGTGTTC

Function

symbol description
ttc23 Orthologous to human TTC23 (tetratricopeptide repeat domain 23).

GO: NA

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-050419-126 Orthologous to human TTC23 (tetratricopeptide repeat domain 23).

Ensembl:

ensembl_id ENSDARG00000022160

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025501 False 1598 mRNA 0.48 11 20825375 20853376
TCONS_00025502 False 686 mRNA 0.46 4 20825418 20828121
TCONS_00025503 False 801 mRNA 0.46 5 20825418 20828449
TCONS_00025504 True 1126 mRNA 0.47 6 20838786 20853748

Neighbor

gene id symbol gene type direction distance location
XLOC_012778 cftr coding upstream 102565 20677090 ~ 20722810 (+)
XLOC_012777 bida coding upstream 252246 20566817 ~ 20573129 (+)
XLOC_012776 wee2 coding upstream 259393 20560442 ~ 20565982 (+)
XLOC_012775 agk coding upstream 284666 20532618 ~ 20540709 (+)
XLOC_012774 rapsn coding upstream 314360 20494413 ~ 20511015 (+)
XLOC_012780 pgpep1l coding downstream 16175 20869923 ~ 20875997 (+)
XLOC_012781 BX548061.1 coding downstream 167951 21021699 ~ 21023601 (+)
XLOC_012782 fam169b coding downstream 207468 21061216 ~ 21063379 (+)
XLOC_012783 arpin coding downstream 217275 21071023 ~ 21076006 (+)
XLOC_012784 kmt5b coding downstream 259468 21113216 ~ 21120218 (+)
XLOC_012772 NA non-coding upstream 448440 20328119 ~ 20376935 (+)
XLOC_012771 NA non-coding upstream 500154 20316443 ~ 20325221 (+)
XLOC_012769 BX890624.2 non-coding upstream 617246 20089381 ~ 20208129 (+)
XLOC_012759 NA non-coding upstream 1204422 19524841 ~ 19620953 (+)
XLOC_012756 NA non-coding upstream 1409335 19413097 ~ 19416040 (+)
XLOC_012786 NA non-coding downstream 309676 21163424 ~ 21169748 (+)
XLOC_012787 BX571884.1 non-coding downstream 337917 21191665 ~ 21191784 (+)
XLOC_012790 NA non-coding downstream 615888 21469636 ~ 21473364 (+)
XLOC_012792 CT573204.1 non-coding downstream 1224396 22078144 ~ 22081753 (+)

Expression


Co-expression Network