Gene
RNA
| Item | Value |
|---|---|
| gene id | G434097 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000306 |
| NCBI id | null |
| chromosome length | 11491657 |
| location | 6466456 ~ 6466941 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU498410 | True | 395 | lncRNA | 0.45 | 2 | 6466456 | 6466941 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000306_06414819_06416263 | NA | coding | downstream | 49774 | 6414541 ~ 6416682 (-) |
| CI01000306_06336883_06339725 | NA | coding | downstream | 126478 | 6336651 ~ 6341662 (-) |
| CI01000306_06289571_06299875 | MAN2B1 | coding | downstream | 166205 | 6289148 ~ 6300251 (-) |
| CI01000306_06273326_06277287 | NACC1 | coding | downstream | 189014 | 6272415 ~ 6277442 (-) |
| CI01000306_06253870_06254391 | NA | coding | downstream | 210390 | 6253346 ~ 6256066 (-) |
| CI01000306_06741870_06743844 | NA | coding | upstream | 274918 | 6741859 ~ 6743942 (-) |
| CI01000306_06776313_06778496 | NA | coding | upstream | 309173 | 6776114 ~ 6778815 (-) |
| CI01000306_06780961_06789374 | NA | coding | upstream | 313832 | 6780773 ~ 6789594 (-) |
| CI01000306_06815523_06829337 | NA | coding | upstream | 348500 | 6815441 ~ 6829516 (-) |
| CI01000306_06998286_07073243 | PCDH17 | coding | upstream | 531345 | 6998286 ~ 7073243 (-) |
| G434086 | NA | non-coding | downstream | 25003 | 6437406 ~ 6452251 (-) |
| G434079 | NA | non-coding | downstream | 40500 | 6425710 ~ 6425956 (-) |
| G434073 | NA | non-coding | downstream | 52282 | 6413753 ~ 6414174 (-) |
| G434064 | NA | non-coding | downstream | 59689 | 6406525 ~ 6406767 (-) |
| G434098 | NA | non-coding | upstream | 764 | 6467705 ~ 6474533 (-) |
| G434273 | NA | non-coding | upstream | 315728 | 6782669 ~ 6782951 (-) |
| G434325 | NA | non-coding | upstream | 382537 | 6849478 ~ 6850138 (-) |
| G434343 | NA | non-coding | upstream | 402868 | 6869809 ~ 6870026 (-) |
| G434016 | NA | other | downstream | 104813 | 6355180 ~ 6361643 (-) |
| G433985 | NA | other | downstream | 269246 | 6196107 ~ 6197210 (-) |
| G433670 | NA | other | downstream | 425173 | 6041014 ~ 6041283 (-) |
| G433450 | NA | other | downstream | 1082693 | 5361643 ~ 5383763 (-) |
| G434338 | NA | other | upstream | 399715 | 6866656 ~ 6866936 (-) |
| G436446 | NA | other | upstream | 3189338 | 9656279 ~ 9671776 (-) |
| G436626 | NA | other | upstream | 3368084 | 9835025 ~ 9836323 (-) |
| G436643 | NA | other | upstream | 3555207 | 10022148 ~ 10025375 (-) |
