XLOC_012952 (capn12)


Basic Information

Item Value
gene id XLOC_012952
gene name capn12
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 36664654 ~ 36729637 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025799
AACACAAGTTTTGTCAAACAGTCCTGACGCATCTGATCCTCTCTAGTGACCTGAAGAGATGTCTGAATTAGGCTCCATTGACAATCCGGTCAAGTTCAAGGATCAAGACTATGAAGTCCTGCTGCAGACGTGCCTCAAATCCGCAGTTCTGTTCTCAGACTCGGTGTTTGCAGCGAATCAAAGCTCCCTCGGTCTCCCAGCGGATCCAGATCCCAAGAAGGCAGTGAAGTGGCTGCGCCCTAAGGAAATCACCAGCAATGCCGTCTTTGTGGAAGGCACCATGGGCACCACCGATATCTGCCAGGGCCAGCTGGGTAACTGCTGGCTGTTGGCGGCCCTGTCCTGTCTCACCATGCATCCAACTCTATTTGTGAAAGTGGTTCCAGCTGGACAAAGCCTGAGTGAATCCTACGCTGGCATCTTCCGATTTAAGTTCTGGCAGTATGGTGAGTGGGTGGAGGTGGTAGTGGATGACAGGCTGCCTGTGAGAGAGGGCCGTCTGCTTTTCAGCTACTCTCGCACCAGCAACGAGTTCTGGAGCGCCCTGGTGGAGAAAGCTTATGCCAAgcTGATTGGTTCTTATGGCAGTCTAAAGGGCGGGATTATCTCAGAAGGAATGGAGGATTTTACAGGAGGAATTGCGTACTCTCTTCCGGTGTCTTCGCGACCCCCGCGCATGCTCTGGAAAGCCATCACCGCAGCCCTGGCCCGGAACAGCCTGCTAAGCTGCTTCATTCATGCCACCACTGTGAAGGACATTGGCACTGTGACCCCAGAGGGTCTCATCAAAGGTCATGCCTATGCCATCACTGAAACAGGCAAGGTCAAGAAGGCTTCTGAAGAGGTCTTTCTGCTGAGACTGCGTAACCCCTGGGGATTTGTTGAGTACTGCGGACCCTGGAGTGACAAgTGTAAAGACTGGGACTTCGTAGACAACACTGAGAAGACGAAACTTGAATTGGCCAAAGTTGAAGATGGAGAATTCTGGATTAGCATAGAGGACTTTTGCAGATTTTATAATACAGTGGAGATGTGCAGTGTGGATCCAGACTCTATGTCGGGGGAAGAGAGTGAAGATACAAGCACCTCGTCCTGGACACTGAGCTTACATCAGGGAACCTGGGTCCCAATGTGCTCTGCTGGCGGCAGCCGACGATACCCAAAATCTTTCTGGAAAAACCCTCAGTATCAGATGATTCTGTCTGAGAAAGATGTGGATGATCACGATTATGGAGAGGGTGAGGAAGGAGATGACGGAGGGGATGGAGAAGAGGATGAAGATGTCAGTTTGTTACCTCCTGTGAGCAAAACCAGCAAACCGGGAGAGAAAAAGAAGAAGTGCACAGTGCTGGTGGAGCTTCTCCAGAAGTACCGCAGACAAAAAGATAAAGTCAACTTCCTCTACATCGCGTTTCATATCTATAAGCTGAAGGACAGCCCTGGATCTCTGGATCAGCAGTTCTTCTCCAGCAACCGTGCGATTTCTCGCTCCGGCAAGTACCGCAGCATCAGGAGCGTCTGGAGGAAAGTTCACCTGGAGCCCGGCAGTTACGTCATCCTGGCCTCCACTTACAGACCCAACCAGCAGGGGGAGTTTTTCCTCCGCATTTACACCAAAACTGGCAACATACAAGGCTTTCAGGATTTCCCCTGCACCAACAACTACTCTGCGATGGTAATGTCAAAGCCAGTCTTACCTGAGGATCAGTACAGGGTGCAGAAGTGGTTTGAGGAAAAGGCTGGATCGGATGAGAGAGTGAATGCTGTGCAGTTTATGAATCTGGTAAACTCAGTGTTGGAAAAAGACTATGAACTTCCTCTGGAGACCTGCAGACAGCTCATCTTTGGAGAAGATACTGGTGGCCGAGGCCGTCTGGACCGAGCTCAAGCAGAGAAGCTGCTCTCCTCCCTCCGCAATCTGCAGTCCATCTTTTTTCAGTTTGATGAAGATTCATCAGGAACTATGAGTCCGTTTGAGCTCAGTTTGGCTCTGAATGCTGCAGgtGTGGAGTGTGACAGCGTTGTGGTGCAGATGTTGTGGGAAAGGTTTGGCGCTGGTGAACAGTACCTGCCCTTCTATGGCTTTGTGTCTTGTGTTGCCAGACTCCAGGTGCTCTTTGATCTTTACGAAGCGGAAACCAACCAGGAGGTGAAGGACAAGGGCATCAACGCTTGGCTGCTCAAGCTGTTGGCTGTGTGAGTCGTCCAGACCCGACACCTCAGCGGGACAGACCTGCTAGGCCAAGCCTGCTCTGACGTCACCCACCTGGGCCTGCGTCTTTTACATGTCCCCCCTCTTCTGTCTCATTTGTGATCTGCGGACCTTTGCCCTGCAGTTGCATCCACCCACTCACTGCTCTATCAGTTGGGGTCTAGTATAGCCATGTAGGTCATTACTGCCTGGATACAAACCATTTCGGCATTTTGTTTCACTCAACCCCACCCAAACACAATGTGTGGGTGTTTATCACGTATACATTACAGGTAAAAGAACTGAGATATTTTAAAGGAATATTTAGCATGTGAAATGAATATTCCATCATCTTTAACTCACCATTATGTCGTTCCAAACTCATAACACTTTCTTTCTACTGtagaacacaaaaggagatgtttAGAGGAATGTTCAGGCTGCTCTTTTACaatataacaaaattaataaaaattggaGACATAC
>TCONS_00025800
ACACAAGTTTTGTCAAACAGTCCTGACGCATCTGATCCTCTCTAGTGACCTGAAGAGATGTCTGAATTAGGCTCCATTGACAATCCGGTCAAGTTCAAGGATCAAGACTATGAAGTCCTGCTGCAGACGTGCCTCAAATCCGCAGTTCTGTTCTCAGACTCGGTGTTTGCAGCGAATCAAAGCTCCCTCGGTCTCCCAGCGGATCCAGATCCCAAGAAGGCAGTGAAGTGGCTGCGCCCTAAGGAAATCACCAGCAATGCCGTCTTTGTGGAAGGCACCATGGGCACCACCGATATCTGCCAGGGCCAGCTGGGTAACTGCTGGCTGTTGGCGGCCCTGTCCTGTCTCACCATGCATCCAACTCTATTTGTGAAAGTGGTTCCAGCTGGACAAAGCCTGAGTGAATCCTACGCTGGCATCTTCCGATTTAAGTTCTGGCAGTATGGTGAGTGGGTGGAGGTGGTAGTGGATGACAGGCTGCCTGTGAGAGAGGGCCGTCTGCTTTTCAGCTACTCTCGCACCAGCAACGAGTTCTGGAGCGCCCTGGTGGAGAAAGCTTATGCCAAgcTGATTGGTTCTTATGGCAGTCTAAAGGGCGGGATTATCTCAGAAGGAATGGAGGATTTTACAGGAGGAATTGCGTACTCTCTTCCGGTGTCTTCGCGACCCCCGCGCATGCTCTGGAAAGCCATCACCGCAGCCCTGGCCCGGAACAGCCTGCTAAGCTGCTTCATTCATGCCACCACTGTGAAGGACATTGGCACTGTGACCCCAGAGGGTCTCATCAAAGGTCATGCCTATGCCATCACTGAAACAGGCAAGGTCAAGAAGGCTTCTGAAGAGGTCTTTCTGCTGAGACTGCGTAACCCCTGGGGATTTGTTGAGTACTGCGGACCCTGGAGTGACAAgTGTAAAGACTGGGACTTCGTAGACAACACTGAGAAGACGAAACTTGAATTGGCCAAAGTTGAAGATGGAGAATTCTGGATTAGCATAGAGGACTTTTGCAGATTTTATAATACAGTGGAGATGTGCAGTGTGGATCCAGACTCTATGTCGGGGGAAGAGAGTGAAGATACAAGCACCTCGTCCTGGACACTGAGCTTACATCAGGGAACCTGGGTCCCAATGTGCTCTGCTGGCGGCAGCCGACGATACCCAAAATCTTTCTGGAAAAACCCTCAGTATCAGATGATTCTGTCTGAGAAAGATGTGGATGATCACGATTATGGAGAGGGAGAGAAAAAGAAGAAGTGCACAGTGCTGGTGGAGCTTCTCCAGAAGTACCGCAGACAAAAAGATAAAGTCAACTTCCTCTACATCGCGTTTCATATCTATAAGCTGAAGGACAGCCCTGGATCTCTGGATCAGCAGTTCTTCTCCAGCAACCGTGCGATTTCTCGCTCCGGCAAGTACCGCAGCATCAGGAGCGTCTGGAGGAAAGTTCACCTGGAGCCCGGCAGTTACGTCATCCTGGCCTCCACTTACAGACCCAACCAGCAGGGGGAGTTTTTCCTCCGCATTTACACCAAAACTGGCAACATACAAGGCTTTCAGGATTTCCCCTGCACCAACAACTACTCTGCGATGGTAATGTCAAAGCCAGTCTTACCTGAGGATCAGTACAGGGTGCAGAAGTGGTTTGAGGAAAAGGCTGGATCGGATGAGAGAGTGAATGCTGTGCAGTTTATGAATCTGGTAAACTCAGTGTTGGAAAAAGACTATGAACTTCCTCTGGAGACCTGCAGACAGCTCATCTTTGGAGAAGATACTGGTGGCCGAGGCCGTCTGGACCGAGCTCAAGCAGAGAAGCTGCTCTCCTCCCTCCGCAATCTGCAGTCCATCTTTTTTCAGTTTGATGAAGATTCATCAGGAACTATGAGTCCGTTTGAGCTCAGTTTGGCTCTGAATGCTGCAGgtGTGGAGTGTGACAGCGTTGTGGTGCAGATGTTGTGGGAAAGGTTTGGCGCTGGTGAACAGTACCTGCCCTTCTATGGCTTTGTGTCTTGTGTTGCCAGACTCCAGGTGCTCTTTGATCTTTACGAAGCGGAAACCAACCAGGAGGTGAAGGACAAGGGCATCAACGCTTGGCTGCTCAAGCTGTTGGCTGTGTGAGTCGTCCAGACCCGACACCTCAGCGGGACAGACCTGCTAGGCCAAGCCTGCTCTGACGTCACCCACCTGGGCCTGCGTCTTTTACATGTCCCCCCTCTTCTGTCTCATTTGTGATCTGCGGACCTTTGCCCTGCAGTTGCATCCACCCACTCACTGCTCTATCAGTTGGGGTCTAGTATAGCCATGTAGGTCATTACTGCCTGGATACAAACCATTTCGGCATTTTGTTTCACTCAACCCCACCCAAACACAATGTGTGGGTGTTTAT

Function

symbol description
capn12 Predicted to enable calcium-dependent cysteine-type endopeptidase activity. Acts upstream of or within keratinocyte differentiation. Predicted to be active in cytoplasm. Orthologous to human CAPN12 (calpain 12).

GO:

id name namespace
GO:0043066 negative regulation of apoptotic process biological_process
GO:0030216 keratinocyte differentiation biological_process
GO:0006508 proteolysis biological_process
GO:0005737 cytoplasm cellular_component
GO:0004198 calcium-dependent cysteine-type endopeptidase activity molecular_function
GO:0005509 calcium ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-050419-245 Predicted to enable calcium-dependent cysteine-type endopeptidase activity. Acts upstream of or within keratinocyte differentiation. Predicted to be active in cytoplasm. Orthologous to human CAPN12 (calpain 12).

Ensembl:

ensembl_id ENSDARG00000010758

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025799 False 2677 mRNA 0.50 20 36664654 36729637
TCONS_00025800 True 2383 mRNA 0.51 21 36664655 36729428

Neighbor

gene id symbol gene type direction distance location
XLOC_012951 clasrp coding upstream 16356 36601403 ~ 36648298 (+)
XLOC_012950 siae coding upstream 65961 36582815 ~ 36598693 (+)
XLOC_012949 NA coding upstream 255341 36141216 ~ 36409313 (+)
XLOC_012948 bckdha coding upstream 582746 36066389 ~ 36081908 (+)
XLOC_012947 tmem91 coding upstream 618488 36037223 ~ 36046166 (+)
XLOC_012953 fosb coding downstream 40121 36769758 ~ 36774965 (+)
XLOC_012954 C18H19orf47 coding downstream 53293 36782930 ~ 36800041 (+)
XLOC_012955 ttc9b coding downstream 76908 36806545 ~ 36865386 (+)
XLOC_012956 NA coding downstream 154980 36884617 ~ 36884817 (+)
XLOC_012957 si:ch211-238g23.1 coding downstream 184584 36914221 ~ 36920453 (+)
XLOC_012945 CR377223.2 non-coding upstream 845091 35819449 ~ 35819563 (+)
XLOC_012944 CR377223.1 non-coding upstream 857688 35806848 ~ 35806966 (+)
XLOC_012942 NA non-coding upstream 1232806 35431006 ~ 35431848 (+)
XLOC_012937 NA non-coding upstream 1588880 35075415 ~ 35075774 (+)
XLOC_012958 NA non-coding downstream 213554 36943191 ~ 36944417 (+)
XLOC_012960 NA non-coding downstream 318868 37048505 ~ 37053102 (+)
XLOC_012963 NA non-coding downstream 542878 37272515 ~ 37281166 (+)
XLOC_012964 NA non-coding downstream 629259 37358896 ~ 37363028 (+)

Expression


Co-expression Network