XLOC_012953 (fosb)


Basic Information

Item Value
gene id XLOC_012953
gene name fosb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 36769758 ~ 36774965 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025801
CAAGAGGAAGCGCTGCCGCCGAAACACCGCACACCTTCTACTCCCGTTTGCAACAAACACACTGCGGATTATTTTATGGATTTATAAAAGCACATTTCATGCATTTCACGGATTGTACCACGACCCGGGAAGTGTTACACAAGGACGGATTGGAATTTAGAAGTTTCCTCGAGCAGGGAACTGGATTGATGTCTTAATGCAACTGTTTTGGAAAGAGACTAAAGGCATCTTGACGAAGACTCCAAGTAAAACTTGTTACGGTGATATCCCGTTCTCGCCGGGCACAGTAGGTGTTTCGGCTTCTCTCGGCTCCATCGGGGACATGTTTCAGGGGTTCCCCGGAGACCCCGACACCGGCTCCCGTGGAAGCTCTTCTCCTTCTCTTGAATCTCAGTACCTGTCGTCCGTGGAATCCTTCGGGAGTCCGCCCACCACCAGCGCACCGCAAGAGTGTGTAACAGCCACTGGCGGGGTAGGGGTGGGTGGAGGGTCAACCGGGGCAGGGGTGGACATGCCCAGCTCATTTGTGCCAACAGTGACGGCCATCACCACAAGCCAGGATCTGCAGTGGATGGTGCAGCCCACTCTAATATCCTCTGTGGCACCAGGTCAAAGTGGCACGGGCTCCAGCACCATGACGCAGCCTGTTGCATTGGATCCTTACGACTTGCCGGGCCCAAGCTTTTCGTCCGGTGGTTTCACCCCACCGAGCTCTGATACTCCTGGCCCAGTGCGTCAGTCTCGAAGCCGCCGCCGTGCACGAGATGAAACGCTGACCCCCGAGGAAGAGGAGAAAAGACGTGTTAGAAGAGAGAGAAATAAACTGGCTGCCGCTAAGTGTAGGAACCGACGGCGTGAGCTCACAGACAGGTTACAGTCGGAGACAGACATTTTGGAGGAGGAGAAGGCCGAGCTAGAGGCTGAAATATCCGAGCTGCAGAAGGAGAAAGAGCGCCTGGAGTTTGTCCTGGTCGCCCACCAACCTGGTTGCAAACTTCCCTACCAGGACCAGCCCCCTGCTCCGCTGCCGCAGACGTCCCCACAGGCGCCTTCTGTCTCCGTGGTGGGTTTAACTGTGAAGGAGGACTCTTTCTACCTGCCGCCGGCCTACTCatcccaccaccaccaccacgtCCCGGTTTCACAGCCCACGCAGACACAGCCGGCACCAGCGCAACAGCAGCAAGGGATGATGCAGGAGAGGGAGCCTGCGGGGCCAGCGCTAACCAGCGAACCAGCAGCAGCGATCAGTCCTCTGATTCCCTGAACTCACCCTCGCTTCTTGCACTTTGAGAGCTCTGCTGATCTCTCGGCCTTTTGCTTGCCTATCGAAAACAGCACATGCGTACATGCCAATCCAAACATTAAATCTATGGATGTACATTGTATTGATCTTTTACAGTTAAGGCCTTGGTTTTGAAACCGAGGCCCAGATGCGTTAGCGTCTGTGCGACTTCATCAGATGATGTAAGTGTATATTAATTCACAATGAATTCAGGCTTAATATCGAAATGAGTCAGTagccct
>TCONS_00025802
CTGCCGCCGAAACACCGCACACCTTCTACTCCCGTTTGCAACAAACACACTGCGGATTATTTTATGGATTTATAAAAGCACATTTCATGCATTTCACGGATTGTACCACGACCCGGGAAGTGTTACACAAGGACGGATTGGAATTTAGAAGTTTCCTCGAGCAGGGAACTGGATTGATGTCTTAATGCAACTGTTTTGGAAAGAGACTAAAGGCATCTTGACGAAGACTCCAAGTAAAACTTGTTACGGTGATATCCCGTTCTCGCCGGGCACAGTAGGTGTTTCGGCTTCTCTCGGCTCCATCGGGGACATGTTTCAGGGGTTCCCCGGAGACCCCGACACCGGCTCCCGTGGAAGCTCTTCTCCTTCTCTTGAATCTCAGTACCTGTCGTCCGTGGAATCCTTCGGGAGTCCGCCCACCACCAGCGCACCGCAAGAGTGTGTAACAGCCACTGGCGGGGTAGGGGTGGGTGGAGGGTCAACCGGGGCAGGGGTGGACATGCCCAGCTCATTTGTGCCAACAGTGACGGCCATCACCACAAGCCAGGATCTGCAGTGGATGGTGCAGCCCACTCTAATATCCTCTGTGGCACCAGGTCAAAGTGGCACGGGCTCCAGCACCATGACGCAGCCTGTTGCATTGGATCCTTACGACTTGCCGGGCCCAAGCTTTTCGTCCGGTGGTTTCACCCCACCGAGCTCTGATACTCCTGGCCCAGTGCGTCAGTCTCGAAGCCGCCGCCGTGCACGAGATGAAACGGTGAGTGGGACCCATTCATGATTTGGTTAAAAAATTTCTATACAAACTGCAAGAAATAAGGCTTAATGTGATACTAAATTTGTTGTGTTCCCAGCTGACCCCCGAGGAAGAGGAGAAAA
>TCONS_00025803
CTGCCGCCGAAACACCGCACACCTTCTACTCCCGTTTGCAACAAACACACTGCGGATTATTTTATGGATTTATAAAAGCACATTTCATGCATTTCACGGATTGTACCACGACCCGGGAAGTGTTACACAAGGACGGATTGGAATTTAGAAGTTTCCTCGAGCAGGGAACTGGATTGATGTCTTAATGCAACTGTTTTGGAAAGAGACTAAAGGCATCTTGACGAAGACTCCAAGTAAAACTTGTTACGGTGATATCCCGTTCTCGCCGGGCACAGTAGGTGTTTCGGCTTCTCTCGGCTCCATCGGGGACATGTTTCAGGGGTTCCCCGGAGACCCCGACACCGGCTCCCGTGGAAGCTCTTCTCCTTCTCTTGAATCTCAGTACCTGTCGTCCGTGGAATCCTTCGGGAGTCCGCCCACCACCAGCGCACCGCAAGAGTGTGTAACAGCCACTGGCGGGGTAGGGGTGGGTGGAGGGTCAACCGGGGCAGGGGTGGACATGCCCAGCTCATTTGTGCCAACAGTGACGGCCATCACCACAAGCCAGGATCTGCAGTGGATGGTGCAGCCCACTCTAATATCCTCTGTGGCACCAGGTCAAAGTGGCACGGGCTCCAGCACCATGACGCAGCCTGTTGCATTGGATCCTTACGACTTGCCGGGCCCAAGCTTTTCGTCCGGTGGTTTCACCCCACCGAGCTCTGATACTCCTGGCCCAGTGCGTCAGTCTCGAAGCCGCCGCCGTGCACGAGATGAAACGCTGACCCCCGAGGAAGAGGAGAAAAGACGTGTTAGAAGAGAGAGAAATAAACTGGCTGCCGCTAAGTGTAGGAACCGACGGCGTGAGCTCACAGACAGGTTACAGTCGGAGACAGACATTTTGGAGGAGGAGAAGGCCGAGCTAGAGGCTGAAATATCCGAGCTGCAGAAGGAGAAAGAGCGCCTGGAGTTTGTCCTGGTCGCCCACCAACCTGGTTGCAAACTTCCCTACCAGGACCAGCCCCCTGCTCCGCTGCCGCAGACGTCCCCACAGGCGCCTTCTGTCTCCGTGGTGGGTTTAACTGTGAAGGAGGACTCTTTCTACCTGCCGCCGGCCTACTCatcccaccaccaccaccacgtCCCGGTTTCACAGCCCACGCAGACACAGCCGGCACCAGCGCAACAGCAGCAAGGGATGATGCAGGAGGTAGCCTTTTCTAGTTCTTTCTATGGGCCGGGCCAGCCGGCGCCGGACGGCCCGTGCCTTGTTGCCGACGGTGGCGGTAACCCTGACGCCGGCAGCTACATCCCCTCATacacatcttcatttgtgttcaccTACCCAGAGGGAGCCTGCGGGGCCAGCGCTAACCAGCGAACCAGCAGCAGCGATCAGTCCTCTGATTCCCTGAACTCACCCTCGCTTCTTGCACTTTGA
>TCONS_00025804
CGCACACCTTCTACTCCCGTTTGCAACAAACACACTGCGGATTATTTTATGGATTTATAAAAGCACATTTCATGCATTTCACGGATTGTACCACGACCCGGGAAGTGTTACACAAGGACGGATTGGAATTTAGAAGTTTCCTCGAGCAGGGAACTGGATTGATGTCTTAATGCAACTGTTTTGGAAAGAGACTAAAGGCATCTTGACGAAGACTCCAAGTAAAACTTGTTACGGTGATATCCCGTTCTCGCCGGGCACAGTAGGTGTTTCGGCTTCTCTCGGCTCCATCGGGGACATGTTTCAGGGGTTCCCCGGAGACCCCGACACCGGCTCCCGTGGAAGCTCTTCTCCTTCTCTTGAATCTCAGTACCTGTCGTCCGTGGAATCCTTCGGGAGTCCGCCCACCACCAGCGCACCGCAAGAGTGTGTAACAGCCACTGGCGGGGTAGGGGTGGGTGGAGGGTCAACCGGGGCAGGGGTGGACATGCCCAGCTCATTTGTGCCAACAGTGACGGCCATCACCACAAGCCAGGATCTGCAGTGGATGGTGCAGCCCACTCTAATATCCTCTGTGGCACCAGGTCAAAGTGGCACGGGCTCCAGCACCATGACGCAGCCTGTTGCATTGGATCCTTACGACTTGCCGGGCCCAAGCTTTTCGTCCGGTGGTTTCACCCCACCGAGCTCTGATACTCCTGGCCCAGTGCGTCAGTCTCGAAGCCGCCGCCGTGCACGAGATGAAACGCTGACCCCCGAGGAAGAGGAGAAAAGACGTGTTAGAAGAGAGAGAAATAAACTGGCTGCCGCTAAGTGTAGGAACCGACGGCGTGAGCTCACAGACAGGTTACAGTCGGTGAGCGATGCTGTACtcatatttaaaaacacaaaaatccaatacagtattttatatatGGTATCAGACAAATACAGggcctaaaatgaacattttgctgCACCTGCCAATGGACGGTGACATAAGGAAAATTTATTAGCTAGAATTTAATCtgcattaaaattgttttttgcacttggaaatttaataataataaaaaaaaacaaatacaaattaggGGCGGTAGTATTCATacattatattcatttaaaaaaataataattaaataaaaaatatatattttctttgatTTCAAAAATGAAACCATGGAGCTTTTATTTTCCATAAGTATTGCAAACTTGGGAAGATGGAGGTATTTTCAAAAGCATGTTGTAAGGATTCAAAAATCACAGCACTTGCAGTAAAATTTACCCTCAACTGAGCTGTATTTAGACCAGAGATGTTCAAACTAGTGCCCGCagaccaaagttggcccattgtaacctttggcCCACCATCTCATCTTCAGGcagtgagaatgatggagagggttagGGAGAATGCCTTTCGTCATGTTTAATTTGATGtaacaattttttgtttgtttgttttattgctgagatACAAACAAtgcaaatgtttcaattaaatgttgtaaattaatcagatttttctaaaatgtaaatgtcatcACTCAACGTATAGTGGaatatgcagaagacatcggcgAGCAAATCATGGCCAAAATTAGTGTATTTCCATTCTGTTATatatgattgtttttgtttttactttaataacttcataataacatgtaaaaaaaaaaaagaatactagttaatataaagcaacgttttctagttatttttaaatattataaaataaatgaggaaatCCCCCATGACAACTATATTCAACTTCGGCCCAccagcctcaatcaagtttggtttttggccctttttaagaaaaagtctgggcacccctgatctagacacTAGAAACAACTCAAAATTTGTTGAGCTTCTCAAAAGATCACACTGCTGGGCTAAACCACgtcacaaac
>TCONS_00025805
GTGATATCCCGTTCTCGCCGGGCACAGTAGGTGTTTCGGCTTCTCTCGGCTCCATCGGGGACATGTTTCAGGGGTTCCCCGGAGACCCCGACACCGGCTCCCGTGGAAGCTCTTCTCCTTCTCTTGAATCTCAGTACCTGTCGTCCGTGGAATCCTTCGGGAGTCCGCCCACCACCAGCGCACCGCAAGAGTGTGTAACAGCCACTGGCGGGGTAGGGGTGGGTGGAGGGTCAACCGGGGCAGGGGTGGACATGCCCAGCTCATTTGTGCCAACAGTGACGGCCATCACCACAAGCCAGGATCTGCAGTGGATGGTGCAGCCCACTCTAATATCCTCTGTGGCACCAGGTCAAAGTGGCACGGGCTCCAGCACCATGACGCAGCCTGTTGCATTGGATCCTTACGACTTGCCGGGCCCAAGCTTTTCGTCCGGTGGTTTCACCCCACCGAGCTCTGATACTCCTGGCCCAGTGCGTCAGTCTCGAAGCCGCCGCCGTGCACGAGATGAAACGCTGACCCCCGAGGAAGAGGAGAAAAGACGTGTTAGAAGAGAGAGAAATAAACTGGCTGCCGCTAAGTGTAGGAACCGACGGCGTGAGCTCACAGACAGGTTACAGTCGGTGAGCGATGCTGTACtcatatttaaaaacacaaaaatccaatacagtattttatatatGGTATCAGACAAATACAGggcctaaaatgaacattttgctgCACCTGCCAATGGACGGTGACATAAGGAAAATTTATTAGCTAGAATTTAATCtgcattaaaattgt

Function

symbol description
fosb Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human FOSB (FosB proto-oncogene, AP-1 transcription factor subunit).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko04657 IL-17 signaling pathway
ko04380 Osteoclast differentiation
ko05030 Cocaine addiction
ko05031 Amphetamine addiction
ko05034 Alcoholism
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-041114-181 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Orthologous to human FOSB (FosB proto-oncogene, AP-1 transcription factor subunit).

Ensembl:

ensembl_id ENSDARG00000055751

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025801 False 1527 mRNA 0.54 6 36769758 36774965
TCONS_00025802 False 879 mRNA 0.53 3 36769770 36772593
TCONS_00025803 False 1420 mRNA 0.57 5 36769770 36774731
TCONS_00025804 False 1895 mRNA 0.42 4 36769785 36773718
TCONS_00025805 True 786 mRNA 0.54 3 36770166 36772842

Neighbor

gene id symbol gene type direction distance location
XLOC_012952 capn12 coding upstream 40121 36664654 ~ 36729637 (+)
XLOC_012951 clasrp coding upstream 121460 36601403 ~ 36648298 (+)
XLOC_012950 siae coding upstream 171065 36582815 ~ 36598693 (+)
XLOC_012949 NA coding upstream 360445 36141216 ~ 36409313 (+)
XLOC_012948 bckdha coding upstream 687850 36066389 ~ 36081908 (+)
XLOC_012954 C18H19orf47 coding downstream 7965 36782930 ~ 36800041 (+)
XLOC_012955 ttc9b coding downstream 31580 36806545 ~ 36865386 (+)
XLOC_012956 NA coding downstream 109652 36884617 ~ 36884817 (+)
XLOC_012957 si:ch211-238g23.1 coding downstream 139256 36914221 ~ 36920453 (+)
XLOC_012958 NA coding downstream 168226 36943191 ~ 36944417 (+)
XLOC_012945 CR377223.2 non-coding upstream 950195 35819449 ~ 35819563 (+)
XLOC_012944 CR377223.1 non-coding upstream 962792 35806848 ~ 35806966 (+)
XLOC_012942 NA non-coding upstream 1337910 35431006 ~ 35431848 (+)
XLOC_012937 NA non-coding upstream 1693984 35075415 ~ 35075774 (+)
XLOC_012960 NA non-coding downstream 273540 37048505 ~ 37053102 (+)
XLOC_012963 NA non-coding downstream 497550 37272515 ~ 37281166 (+)
XLOC_012964 NA non-coding downstream 583931 37358896 ~ 37363028 (+)

Expression


Co-expression Network