XLOC_012954 (C18H19orf47)


Basic Information

Item Value
gene id XLOC_012954
gene name C18H19orf47
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 36782930 ~ 36800041 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025806
ACAAGATTTCCGCAACGCGTCGGTTTTTTCCCTGGGAAGATGGCGACCGTCACAACAGCCACCTCAGAATGGATCCAGTTCTTCAAAGATGCTGGGATCCCTCCTGGACTGGCTGTCAACTATGCCGTGTCATTTGTTGATAACAGGATTCAGAAAAATATGCTTATGGACCTCAGTAAAGAAATAATGATGGACTTAGGAATCACAGTCATTGGAGACATCATAGCCATTCTCAAACATGCAAAGCATGTGTATAGACAGgATCTGTGTAAAATGACAACTGAGGCCATTTCGTCTGGACAGACTAGTGTACAGGCTGAACTGAGGCGTACTGCCAACACTCCTGCCACACGCATGATCGCCAATGCTCTGAGCCGGGACTCCCCACCAAGCACGCCTGCTCGCCGGCCTGACAACCGAATTTCAGTTACCGTCTCCAATGCCAGTGCCAAAACCGCGCCCAGCAAACCAGCTGAAGAAAATGGATTGCAAGTGAAGCGCAGACGAGTCACTAGAGAAATGGAAGGGAAATACATCATAAACATGCCAAAAGGTACAACAGCTCGCACTCGACGCATCCTGGAACAGCAGGATAAGAAAGCCAAGGTTTTAAAGCGTACTTCAGTTTTTGACAGACTTGGGGCAGAGTCTAAAGCAGACACTACCTCCGCCACTAAGCAGCCAACAGGTGTGTTTAGCCGACTGGGTGAAACGGAGGACGATGAAGAGAGTGGAGAAAAGACAGATGGTGTTACCGACACCTTTGAGGACAATGACAGTGACGGTGAGGGCTCAGTGCTGCAGTACGCCGGAGTCCTCAAAAGACCCCCTCCATCCTCTAAAAAAGACAGTGTGACCAACAAATCGAAACCGCTCACTTTGCGGCGACTAGGCGCTAAATACAAACTCCCTCCATCTGAATCCTCAGCACCCATCTCCTCCTCTACCTCCTCCTCTAACCAGCAGGGGACACCCAAACTTGGCATTCTGCAGAGACTGGGCAAAGCCCCGTCAGTCAAGCCTACCTCCTCCACCCCTCCAGTCAGTCAGTCCACGGACACCCAGGACAGTCGAGTCACGAGTAGCAGAAGCAAAAGTCAGGGCAGCTTTGCTCTGGCCAGCCCGAAGGTCAGTAGTAGCACAGGCGACACTCACGGGGCTCAGATGGACGCTGGGGCGGTCAGTGTGTTCAAGAGACTGGGTGCCCGAAAAAACTGAAAAAGGTTCCTTTTTTAATCAGTTTGCCCCTTTTATAACCTAAAACTCACCTGAATTTTTATTTGAGAGAAAAAAACGTGGACGAAATAGGTTGTCGATATGCTGTACCTCATGGAGTGATTTGATTTTGAAAGTAGgggacaaacaaaaaaagaagagctGCAATATCTGTTAAAAGTCAGCGTGGACATACCTGTCGTACTTCTGTTTGGTTATAGGAAACATGTTTTATCCCGGTCTCTTACTTTTATAGTGACTCTCCTACGCCCCAGTGAGTGAAAGGTTTTTAAAGGATTAAAGGGGGGCTTTGTAACTATATTTTTGAAGCATGGTGCCCCGAATCAAATCCTAGAAATGCCTTCTTTTTGTTCTCCACCCTACATTTGCTAAGAGACGTAAGTGAAAGCATGTGCTATGTTTACCACAAACACCTCAGCTCACAGAAAGTAAGCTTATGTTTAACCATCCTCTTACCTCTATGTTTTAAAagtgatagttcaaccaaaaattatGAGT
>TCONS_00025807
ATCCCTCCTGGACTGGCTGTCAACTATGCCGTGTCATTTGTTGATAACAGGATTCAGAAAAATATGCTTATGGACCTCAGTAAAGAAATAATGATGGACTTAGGAATCACAGTCATTGGAGACATCATAGCCATTCTCAAACATGCAAAGCATGTGTATAGACAGgATCTGTGTAAAATGACAACTGAGGCCATTTCGTCTGGACAGACTAGTGTACAGGCTGAACTGAGGCGTACTGCCAACACTCCTGCCACACGCATGATCGCCAATGCTCTGAGCCGGGACTCCCCACCAAGCACGCCTGCTCGCCGGCCTGACAACCGAATTTCAGTTACCGTCTCCAATGCCAGTGCCAAAACCGCGCCCAGCAAACCAGCTGAAGAAAATGGATTGCAAGTGAAGCGCAGACGAGTCACTAGAGAAATGGAAGGGAAATACATCATAAACATGCCAAAAGGTACAACAGCTCGCACTCGACGCATCCTGGAACAGCAGGATAAGAAAGGTACctta

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000020611

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025806 False 1734 mRNA 0.47 8 36782930 36800041
TCONS_00025807 True 513 mRNA 0.48 5 36786842 36793880

Neighbor

gene id symbol gene type direction distance location
XLOC_012953 fosb coding upstream 7965 36769758 ~ 36774965 (+)
XLOC_012952 capn12 coding upstream 53293 36664654 ~ 36729637 (+)
XLOC_012951 clasrp coding upstream 134632 36601403 ~ 36648298 (+)
XLOC_012950 siae coding upstream 184237 36582815 ~ 36598693 (+)
XLOC_012949 NA coding upstream 373617 36141216 ~ 36409313 (+)
XLOC_012955 ttc9b coding downstream 6504 36806545 ~ 36865386 (+)
XLOC_012956 NA coding downstream 84576 36884617 ~ 36884817 (+)
XLOC_012957 si:ch211-238g23.1 coding downstream 114180 36914221 ~ 36920453 (+)
XLOC_012958 NA coding downstream 143150 36943191 ~ 36944417 (+)
XLOC_012959 sipa1l3 coding downstream 215144 37015185 ~ 37201550 (+)
XLOC_012945 CR377223.2 non-coding upstream 963367 35819449 ~ 35819563 (+)
XLOC_012944 CR377223.1 non-coding upstream 975964 35806848 ~ 35806966 (+)
XLOC_012942 NA non-coding upstream 1351082 35431006 ~ 35431848 (+)
XLOC_012937 NA non-coding upstream 1707156 35075415 ~ 35075774 (+)
XLOC_012960 NA non-coding downstream 248464 37048505 ~ 37053102 (+)
XLOC_012963 NA non-coding downstream 472474 37272515 ~ 37281166 (+)
XLOC_012964 NA non-coding downstream 558855 37358896 ~ 37363028 (+)

Expression


Co-expression Network