XLOC_012956


Basic Information

Item Value
gene id XLOC_012956
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 36884617 ~ 36884817 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026919
TACCACTCTCTTTTTATCCTTTCTTTTATGACCCCTAGTTGTTTCCTCAGGCCATTTCCCCTTtccaattgttttaatggtatgcaagtctacaagcagattatacacatataacctgaatatatagattaacttcacactccaaagagcacaaaatccacctcaaaacccagagtttctcacATTTCAGAGTTAataaac

Function

GO:

id name namespace
GO:0030097 hemopoiesis biological_process
GO:0030099 myeloid cell differentiation biological_process
GO:0048731 system development biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0002520 immune system development biological_process
GO:0002262 myeloid cell homeostasis biological_process
GO:0000027 ribosomal large subunit assembly biological_process
GO:0000028 ribosomal small subunit assembly biological_process
GO:0071826 ribonucleoprotein complex subunit organization biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0022618 ribonucleoprotein complex assembly biological_process
GO:0008152 metabolic process biological_process
GO:0034470 ncRNA processing biological_process
GO:0043009 chordate embryonic development biological_process
GO:0006364 rRNA processing biological_process
GO:0019538 protein metabolic process biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:1901564 organonitrogen compound metabolic process biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0048534 hematopoietic or lymphoid organ development biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0006412 translation biological_process
GO:0006414 translational elongation biological_process
GO:0030218 erythrocyte differentiation biological_process
GO:0048856 anatomical structure development biological_process
GO:0010467 gene expression biological_process
GO:0044237 cellular metabolic process biological_process
GO:0044238 primary metabolic process biological_process
GO:0048872 homeostasis of number of cells biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0044260 cellular macromolecule metabolic process biological_process
GO:0044267 cellular protein metabolic process biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0042274 ribosomal small subunit biogenesis biological_process
GO:0071704 organic substance metabolic process biological_process
GO:0006518 peptide metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034101 erythrocyte homeostasis biological_process
GO:0032501 multicellular organismal process biological_process
GO:0002181 cytoplasmic translation biological_process
GO:0032502 developmental process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0007417 central nervous system development biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0043226 organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0019843 rRNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003723 RNA binding molecular_function
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko00230 Purine metabolism
ko00240 Pyrimidine metabolism
ko03020 RNA polymerase
ko03230 Viral genome structure
ko05164 Influenza A
ko05169 Epstein-Barr virus infection
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026919 True 201 lncRNA 0.36 1 36884617 36884817

Neighbor

gene id symbol gene type direction distance location
XLOC_012955 ttc9b coding upstream 19231 36806545 ~ 36865386 (+)
XLOC_012954 C18H19orf47 coding upstream 84576 36782930 ~ 36800041 (+)
XLOC_012953 fosb coding upstream 109652 36769758 ~ 36774965 (+)
XLOC_012952 capn12 coding upstream 154980 36664654 ~ 36729637 (+)
XLOC_012951 clasrp coding upstream 236319 36601403 ~ 36648298 (+)
XLOC_012957 si:ch211-238g23.1 coding downstream 29404 36914221 ~ 36920453 (+)
XLOC_012958 NA coding downstream 58374 36943191 ~ 36944417 (+)
XLOC_012959 sipa1l3 coding downstream 130368 37015185 ~ 37201550 (+)
XLOC_012960 NA coding downstream 163688 37048505 ~ 37053102 (+)
XLOC_012961 qpctla coding downstream 334323 37219140 ~ 37234696 (+)
XLOC_012949 NA non-coding upstream 475304 36141216 ~ 36409313 (+)
XLOC_012945 CR377223.2 non-coding upstream 1065054 35819449 ~ 35819563 (+)
XLOC_012944 CR377223.1 non-coding upstream 1077651 35806848 ~ 35806966 (+)
XLOC_012942 NA non-coding upstream 1452769 35431006 ~ 35431848 (+)
XLOC_012937 NA non-coding upstream 1808843 35075415 ~ 35075774 (+)
XLOC_012963 NA non-coding downstream 387698 37272515 ~ 37281166 (+)
XLOC_012964 NA non-coding downstream 474079 37358896 ~ 37363028 (+)
XLOC_012965 AL627088.2 non-coding downstream 573629 37458446 ~ 37458562 (+)

Expression


Co-expression Network