XLOC_012962 (tbcb)


Basic Information

Item Value
gene id XLOC_012962
gene name tbcb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 37259800 ~ 37270740 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025813
GTGGGCAGAATCTTCCAGAATTTAGTGGCGTGGTCTTTGACGGAAGAGCTTTTCACGAGAAGCAGAACAATCAGAAAAATAGACGTTTTAgagatttgtattttaaatacaaccTTTGAAATAACTTATCGCGCGTAACCGATGAGATCTGAACGCGCAGACAGTTGACTGAAGCAGTGGATGAAGTGAAAGTCTTGTCACCTTGACCAAGCAGCAGCAGAAGATGGACGGGAGTGTGACAATCATCACAAATCCCACCGTGTCCGTGCGGGTGACCAGCACCGTCAGCTCCTTCGAGGTGAACCGGAGATTCAACCGGGGAATAACGATCGCAGAGTTTAAGaGTAAACTGGAGTTGATTGTGGGCACTCCAGCTAGTTGTATGGACCTAGATCTGTTCAGCTCCTCAGACAAGTTCCTTCAGAAACTAGATAACAATGAAGCTCTGCTGGGCTCCTATCATGTGGATGATGACTGCAGAATACATgtGACAGACCGTAGCGGTACACAGAGCGGAGAGTTCACAGATTTGTCAAAAGtggagaaatttgaaatctcagATGAAGCCTATGAAAAACGGGCAGATTCAATTCGGAACTTCAAGAAGAATATGAAGTTAGGTCGATTTAATGAGGAAGAGAGGGCCAAGCAAGAAGAGGCTGTCGCTAAGAAAGAGGAAGAGGAGAAGGTGGCCGCTGAGGCTATCGCTGTTGGAAACCGCTGTAAAGTTCAAGTTCCTGGGCAGGCCACTAAGATTGGCACTGTTATGTATGTTGGTACGGCAGATTTCAAGCCAGGCTACTGGGTAGGTGTGAAGTACGATGAGCCACTCGGGAAGCATGATGGCAGTGTGAATGGAAAACGTTACTTTGAGTGCGAACCAAAATATGGTGCCTTCGTGAAGCCCCTCACAGTGACTGTAGGAGATTTCCCTGAAGAAGACTATGGTTTGGATGAGATGTGAGAATCAGAACCTGATGAACAGTCAGAAAGTTCTTCAAGAAGTCTGCAGTGAGACTTTGCTGAAGTAGAAGGGTTTTCTGTTGTCATTGCggatcattttgtttttttgctgatcTTGAAGAGATCGGCAACAATTATACCTTAATTTCCTTCAGTCAAACTCAAGAAATGATCTTAAACAACATCTGTGCCCTGATGACTGGAAGTAACTGGTAAAGCAATTCTGAGAACATCAGTCAAGATCAGAGTTAGAACCTAGTTGAACTCACTTGCATGTTGATTATTGAATTCCAAAGTTCTGCAGCTGATTTGAGCCCAGGCTTAGTCATTTTACTTTAAACAAatccaacaaaacaaaatgttcttCGCGTTTTTTGCAATTCTGTACACAATGTATTGTATAGAGGTCTTATTTGtactaatgatttatttttgttgctttctTGTGCATCAACATGACTGTGTTTAGGGTCTCAGTCCCTTATCGTCCTCGGCACTTTAGCAATTAGCTCACTTATGAGTGCAGTAATGTAGAATCCTGTGGCctcagttttctgtattttcatTGTAAATTACAAAAGTGTGACAATAACTCTAGCTTTTTACTTTGGCATGTAAAGATTTTGAtgcatgtcaaattcactttGAACAGAAAGGCCTCATGTTTTATGGAATTCTGTTCAGCAAAATTTGTTTTGAATAAATCCATGTGCCAACTTTGGACATCATGCA
>TCONS_00025814
TGGGCAGAATCTTCCAGAATTTAGTGGCGTGGTCTTTGACGGAAGAGCTTTTCACGAGAAGCAGAACAATCAGAAAAATAGACGTTTTAgagatttgtattttaaatacaaccTTTGAAATAACTTATCGCGCGTAACCGATGAGATCTGAACGCGCAGACAGTTGACTGAAGCAGTGGATGAAGTGAAAGTCTTGTCACGTGAGTGCATGTAAATACTGGTTAGCTATAGCAACCAGCAAGATATCAGATATTAAACATTCAGCGGAAGTCATGAATAAATGAGTCCGTCCGGATATCTGTGCTTTACTGCGTAAATGCCAAACACGTCATTTGGTTTTCAGCTTGACCAAGCAGCAGCAGAAGATGGACGGGAGTGTGACAATCATCACAAATCCCACCGTGTCCGTGCGGGTGACCAGCACCGTCAGCTCCTTCGAGGTGAACCGGAGATTCAACCGGGGAATAACGATCGCAGAGTTTAAGaGTAAACTGGAGTTGATTGTGGGCACTCCAGCTAGTTGTATGGACCTAGATCTGTTCAGCTCCTCAGACAAGTTCCTTCAGAAACTAGATAACAAT
>TCONS_00025815
GAAGCAGTGGATGAAGTGAAAGTCTTGTCACCTTGACCAAGCAGCAGCAGAAGATGGACGGGAGTGTGACAATCATCACAAATCCCACCGTGTCCGTGCGGGTGACCAGCACCGTCAGCTCCTTCGAGGTGAACCGGAGATTCAACCGGGGAATAACGATCGCAGAGTTTAAGGTGCGGCCGTGTGATCGTGCTTGTGTGTGATACAGTAGGCTAACGTTAGTGGGTGAAGTAATGTGAAACTTTGCTGTCTCCATATGTCCAGTGTCATTTCAGATACAcatcatgtttttgttttcttgtttattaGAAGTATccatgttatattattttagataaaatgGCTAAAACAAATTTCCTACCTTGTTTTACTCCGTCACATATGTAATGTACTGGTCACATGTAAACGCACTGTGTGCTGTCCATTGTGGCAATATGGCAAAATAACAGCCATGAACATCACTCTTGCATGATCCTTATTATTCAGTACAAACGTCATTTGGACAATTGAGTGTATTTTATCTCAAACAAATTcgcatt

Function

symbol description
tbcb Orthologous to human TBCB (tubulin folding cofactor B).

GO: NA

KEGG:

id description
ko04812 Cytoskeleton proteins
ko04147 Exosome

ZFIN:

id description
ZDB-GENE-030131-9296 Orthologous to human TBCB (tubulin folding cofactor B).

Ensembl:

ensembl_id ENSDARG00000068404

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025813 False 1695 mRNA 0.42 7 37259800 37270740
TCONS_00025814 False 581 mRNA 0.44 2 37259801 37264238
TCONS_00025815 True 539 processed_transcript 0.42 2 37259970 37260651

Neighbor

gene id symbol gene type direction distance location
XLOC_012961 qpctla coding upstream 25104 37219140 ~ 37234696 (+)
XLOC_012959 sipa1l3 coding upstream 58250 37015185 ~ 37201550 (+)
XLOC_012960 NA coding upstream 206698 37048505 ~ 37053102 (+)
XLOC_012958 NA coding upstream 315383 36943191 ~ 36944417 (+)
XLOC_012957 si:ch211-238g23.1 coding upstream 339347 36914221 ~ 36920453 (+)
XLOC_012963 NA coding downstream 1775 37272515 ~ 37281166 (+)
XLOC_012964 NA coding downstream 88156 37358896 ~ 37363028 (+)
XLOC_012965 AL627088.2 coding downstream 187706 37458446 ~ 37458562 (+)
XLOC_012966 CR381582.1 coding downstream 692038 37962778 ~ 37962897 (+)
XLOC_012967 CR381582.2 coding downstream 747161 38017901 ~ 38018018 (+)
XLOC_012956 NA non-coding upstream 374983 36884617 ~ 36884817 (+)
XLOC_012949 NA non-coding upstream 850487 36141216 ~ 36409313 (+)
XLOC_012945 CR377223.2 non-coding upstream 1440237 35819449 ~ 35819563 (+)

Expression


Co-expression Network