XLOC_012963


Basic Information

Item Value
gene id XLOC_012963
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 37272515 ~ 37281166 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00027140
CTAAAACTGGATaatcctgtttatttatttatttaatttattgaagAATGGTTTTTATCGCGTTTGAATGCCTGAAAGCCGTCGACAAGGATGCCTCAAGAATAAccttaagattattttgctcatgaATTTTGTTTGGATCATGATTGTGGAACTTTAAGTTCGTTAAGAAAATGAACCTCTGCTTATGGTTGAACCTCATAACATTTTCCGGTCTGCTTTTGTCGTTGGACACAAGAGCTCATCAAGCTGAAGAAGAGCCGCTGACTGCCTCAAACATGTCCCACTATTCAACACACCTCTCCAAAGCTAAATCCATCACCCCGACTGAAGCATCTGTGAACACGCTGCACATCTCAACACCCAGCAAACACCTGATCTCTGCATCTATAGcTTTATCATTTGAAACCCTTTTCTTTGGATGGATAAAACAGGCGTTCCTCCAGGTCACCTAACAGCAGGTGGTGGATTTGATGCGGGTAGTTTCCTCGGTGGTATGATTCTGGCCTTTATCATCATACTGGCCGTCGCTGTAGGGTACAGGCTGTTCTGCTCAAAACGGGCGATTCGCTACAGGGTCATCGAGGAACATGATGCCATCATTTAAAAATGGAGCCATCCAAGAAACCTTCATGATCTGAGGAGTTGGTTTTCATCATAATTCATATGCATATGAGGGGTGTGTTCCTGGTGTCTTCACACTGGTTTGACTTGATTTAATTGAACCAATTGAGGGTGTGATTGCTTTGTTAGCGCCACTCATTTAAATGTGTGAACTTCGCAATCCAAATGGTGCACAGACACTAATGAAATGTAGGTTTCGGTCCACTTCCAAATAAACTGTAATGCTGTTCAACAGAC
>TCONS_00025816
TTTATCGCGTTTGAATGCCTGAAAGCCGTCGACAAGGATGCCTCAAGAATAAccttaagattattttgctcatgaATTTTGTTTGGATCATGATTGTGGAACTTTAAGTTCGTTAAGAAAATGAACCTCTGCTTATGGTTGAACCTCATAACATTTTCCGGTCTGCTTTTGTCGTTGGACACAAGAGCTCATCAAGCTGAAGAAGAGCCGCTGACTGCCTCAAACATGTCCCACTATTCAACACACCTCTCCAAAGCTAAATCCATCACCCCGACTGAAGCATCTGTGAACACGCTGCACATCTCAACACCCAGCAAACACCTGATCTCTGCATCTATAGGCGTTCCTCCAGGTCACCTAACAGCAGGTGGTGGATTTGATGCGGGTAGTTTCCTCGGTGGTATGATTCTGGCCTTTATCATCATACTGGCCGTCGCTGTAGGGTACAGGCTGTTCTGCTCAAAACGGGCGATTCGCTACAGGGTCATCGAGGAACATGATGCCATCATTTAAAAATGGAGCCATCCAAGAAACCTTCATGATCTGAGGAGTTGGTTTTCATCATAATTCATATGCATATGAGGGGTGTGTTCCTGGTGTCTTCACACTGGTTTGACTTGATTTAATTGAACCAATTGAGGGTGTGATTGCTTTGTTAGCGCCACTCATTTAAATGTGTGAACTTCGCAATCCAAATGGTGCACAGACACTAATGAAATGTAGGTTTCGGTCCACTTCCAAATAAACTGTAATGCTGTTCAACAGACAATATGAATGCAGCAAggaccaaacaaaacaaaacttggtgaaacaaaaacagcaaatgaTGTCATAAGATGTGACTATAAAAGTACAGAATGCT

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0031290 retinal ganglion cell axon guidance biological_process
GO:1901566 organonitrogen compound biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0007275 multicellular organism development biological_process
GO:0071363 cellular response to growth factor stimulus biological_process
GO:0006412 translation biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0070848 response to growth factor biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0042255 ribosome assembly biological_process
GO:0048618 post-embryonic foregut morphogenesis biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0097485 neuron projection guidance biological_process
GO:0006518 peptide metabolic process biological_process
GO:0032502 developmental process biological_process
GO:0007411 axon guidance biological_process
GO:0007420 brain development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005829 cytosol cellular_component
GO:0005840 ribosome cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0019797 procollagen-proline 3-dioxygenase activity molecular_function
GO:0031544 peptidyl-proline 3-dioxygenase activity molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function
GO:0048029 monosaccharide binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

ZFIN:

id description
ZDB-GENE-050419-69 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasmic vesicle. Orthologous to human TMEM123 (transmembrane protein 123).

Ensembl:

ensembl_id ENSDARG00000095674

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00027140 False 861 lncRNA 0.42 4 37272515 37281071
TCONS_00025816 True 862 mRNA 0.43 4 37272568 37281166

Neighbor

gene id symbol gene type direction distance location
XLOC_012962 tbcb coding upstream 1775 37259800 ~ 37270740 (+)
XLOC_012961 qpctla coding upstream 37819 37219140 ~ 37234696 (+)
XLOC_012959 sipa1l3 coding upstream 70965 37015185 ~ 37201550 (+)
XLOC_012960 NA coding upstream 219413 37048505 ~ 37053102 (+)
XLOC_012958 NA coding upstream 328098 36943191 ~ 36944417 (+)
XLOC_012964 NA coding downstream 77730 37358896 ~ 37363028 (+)
XLOC_012965 AL627088.2 coding downstream 177280 37458446 ~ 37458562 (+)
XLOC_012966 CR381582.1 coding downstream 681612 37962778 ~ 37962897 (+)
XLOC_012967 CR381582.2 coding downstream 736735 38017901 ~ 38018018 (+)
XLOC_012968 nucb2b coding downstream 910180 38191346 ~ 38210092 (+)
XLOC_012956 NA non-coding upstream 387698 36884617 ~ 36884817 (+)
XLOC_012949 NA non-coding upstream 863202 36141216 ~ 36409313 (+)
XLOC_012945 CR377223.2 non-coding upstream 1452952 35819449 ~ 35819563 (+)
XLOC_012971 NA non-coding downstream 1122159 38403325 ~ 38518803 (+)

Expression


Co-expression Network