XLOC_012964


Basic Information

Item Value
gene id XLOC_012964
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 37358896 ~ 37363028 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026923
tttatgtttatcatTTTTAGCAATACACATAAATCAATGTTTTCATAACAACTCCTAATCTGTATCATCAAATAGgctcataaaaataataaaacattcatCATGACACATCATTTCTCTGTGCTTTTATAACATAGTGCTTAATCAAAGCTCTTTTTTATGTGTCTTTAGTGGGTGtcacttatttttattcatatttagctTCTGGCGTGAAGTGTCACTCATCACAGAATAAAtctgattatacaaaaaatacacCAGTGAAGTTCAAGCACTCGCTTCTttatgaataaagaaataaattgtcTTTCATTATGTAGAAAGGCGCAGAAAAGTAGTCCCATGCAGTTCCCATAATTGTTATGTAAATGAGGCTTCCCGGTCCATTGAGAAATCATTTTGTCAAGACTGAGCCCGGCTCTTTTCCCATACATTTAACATTGAGTGACTGATTATGAAGCCCTTTTAATCCGCTGCAGGGACTGTAAGAGCAtgatgaatggattaaaaaagttactttgtactttttttctccccctttTAACCAGCCAACCAATATCCAGCCCTAACACGAACTGTCTCTGCAAGCCATATATAATCAACCACATTTGCGTGGTTTTCAgtgtatccCTTGTCATTTAGATTCTGCTCTCAATTATCTCCATATTAAACTCTAGTGATTTGGAATTGAATGTATGGGAGAAAGGGAATTGTGAAGTGTAAAACCATCTTTTATTAGTAGTGTGAAATCATTCACTGACCACCGGTGAAATATACTTTTCATAAATACTTAGAATAACGAATGTGATTTGTGATCATGTTGCTGTACTAAAAGTGCTAACATTTGAGGGTTTTTTTCAACCTAATTTAACATAGAAAGTAGTTTTATTGgtctttttatttgatttaaac

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026923 True 912 lncRNA 0.33 2 37358896 37363028

Neighbor

gene id symbol gene type direction distance location
XLOC_012963 NA coding upstream 77730 37272515 ~ 37281166 (+)
XLOC_012962 tbcb coding upstream 88156 37259800 ~ 37270740 (+)
XLOC_012961 qpctla coding upstream 124200 37219140 ~ 37234696 (+)
XLOC_012959 sipa1l3 coding upstream 157346 37015185 ~ 37201550 (+)
XLOC_012960 NA coding upstream 305794 37048505 ~ 37053102 (+)
XLOC_012965 AL627088.2 coding downstream 95418 37458446 ~ 37458562 (+)
XLOC_012966 CR381582.1 coding downstream 599750 37962778 ~ 37962897 (+)
XLOC_012967 CR381582.2 coding downstream 654873 38017901 ~ 38018018 (+)
XLOC_012968 nucb2b coding downstream 828318 38191346 ~ 38210092 (+)
XLOC_012969 lmo2 coding downstream 925849 38288877 ~ 38296665 (+)
XLOC_012958 NA non-coding upstream 414479 36943191 ~ 36944417 (+)
XLOC_012956 NA non-coding upstream 474079 36884617 ~ 36884817 (+)
XLOC_012949 NA non-coding upstream 949583 36141216 ~ 36409313 (+)
XLOC_012971 NA non-coding downstream 1040297 38403325 ~ 38518803 (+)
XLOC_012972 NA non-coding downstream 1385585 38748613 ~ 38754692 (+)

Expression


Co-expression Network