XLOC_012968 (nucb2b)


Basic Information

Item Value
gene id XLOC_012968
gene name nucb2b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 38191346 ~ 38210092 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025820
GTGTTTAGCACGCATCAGGTAAAACAAGTTGCAAATGAACTGTCAAAGCGATTTTACCACTGACGCCTGATCGAGGAGACGCGACATCGAGTTTGTAAACACTGCTCTCAGGGGGTCTTTCAGGGATGTGGAGACCGTCACACTGTTGCTTGATTCTGGCTCTGTGGGCTTGTTTGGATGCACTGCCAGTTGCTGTGGATAAAACCAAAGTGAGCCCTCCAGCAGAGGCACAGGAACCACCTGAAAATGCAGACACCGGCTTGCACTATGATCGATATCTCAGAGAGGTTATCGATTTCCTGGAAAAGGACCCGCATTTCAGAGAGAAACTTCATAACACCGACATGGAAGATATCAAGCAAGGAAAGCTGGCGAAAGAGTTGGACTTTGTCAGCCATAATGTGCGAACGAAACTTGATGAGCTGAAGAGGCAAGAAGTGAACAGACTGCGGACCTTAATCAAAGCCAAACAAGACCTAAATGGAGAAAAAGgTATGACCGTGGACCACCAAGCACTTCTGAAACAGTTTGAGCATCTGAATCACATGAATCCACACACATTTGAGGTGGAAGATTTGGATCGCCTCATTAAATCGGCCACCAATGACCTAGAGAACTTTGACAAGGAAAGACATGAAGAGTTCAAAAGGTACGAGATGATGAAGGAACATGAACGGAGGGAACATCTTAAAACAATGAACGAGGAAGAGCGCAAAAAAGAAGAGGAACATTATGAAGAGATGAAGAAGAAACATGCAGACCATCCCAAACTCAATCATCCTGGCAGTCAAGACCAGCTGAAGGAGGTCTGGGAGGAAGCCGATGGTTTGGATCCCAATGATTTCGATCCAAAGACATTCTTCAACTTGCACGACACTAATGGTGATGGATATTTCGATGAGCAAGAGCTGGAAGCACTGTTTACCAAAGAGCTGGAGAAGATCTATGACCCCGCACAAGAAGAGGATGATATGGTGGAGATGGAGGAGGAGAGACTGAGGATGAGAGAGCATGTGATGAATGAGGTTGACACTAACAAAGACAGGCTTGTTTCACTTGAGGAATTTATTACTGCCACGAACAAGAAGGAATTTCTAGAGCCAGATGAATGGGAGACTCTAGATCAGAATCCAGTCTACACTGAAGAAGAGCTGAGAGAGTTTGAGCAGCATCTCGCTCGAGAAGAACAAGACCTGAACCTGAGGACAAATGACCTGCAGAAGCAGAGAGAGGAGCTGGAGAGACAACAGGATCAGCTCAACGCCCAGAAGATGGAACTACAGCAGGCAGTACAACACATGGAGCGGCTGAAAGCACAGAAAACAGAGCCTCCAGTGCAGCCCAAAGCTCTGTCCGCTGTGGAGATTTTACCTGGTGATGGTCAGCAGTTGTCGCAGGACCTTCCTCCACATTCTTAGCAGCTCAAGCTCTCCTGAATGTCTGTAATGTGTATGTGTGCTGTATGTAGAGTTAAACATTTCCATCCTCACATTCAATGTACTGTCTCATAGGAAATGCATTGGCATCAAACACAAAGCAACATTCAACAACCATGAATATTGAAACGTGATAAACAGAACTATCAGTGGACGGTTACACTTTTGACtatgttgttgtttgtgaggaTAGGGATTGTACTTGAATCTTGTGCTCAAAGAAAgttgattgtattttattgtttaattgtcATGTCTGATTTGCACAAACACAGCCAAACCTCATAGgataaatctttttattttagttaacgcATAATTCAGGATTCCTTTCATAAAGTACGTCCAATGCTAAACATATTCTGGTGTAAAACAAATTTGTAGAAAATATGATATCCATCCCAGGATATCAGTAATTATACCATCACTGTTTCAAGTGAATAATCAACAGCTTTTTGTGGACACTTTCATGCTAGAAATGACAGAACACTGCCTTTAAAATAGCcacaaaaatgtacacatttcTAAAACACGCAGAAATCGATAGTTCATATATGAGAACGTTTGGCTTGTTTGAGTATCCTTTGTGGGTTCCAGAGTATTATTGTcgtttaaatttctttaaaatttattaaattatgtcaGCTTCAACAA
>TCONS_00025821
ttaaaatttattcattcattaattttcttttcggcttagtccctttattaatctggggtcgccacagcgtaatgaaactgtggagtttgcatgttctcccctcgtttgtgtgggtttcttctgggtgctccggtttcccccaccagtCCGAAAacctgtggtacaggtgaattgggtacgctaaaattgtctgtagtgtatgtgtgtgaatgagtgtgtatggatgtttcccagtgatgggttgtagctggaagggcatccactgtgtaaaacatatgctagataagttggcggttcattctgctgcggcaacgccagattaataaagggactaagccgaaaagaaaatgaatgaattatatattaattcaataataataatttttaaaaaaaatctttacacaaacacacgcacacacacacacacatatatatatatatatatatatatatatatatatatatatatatgtatgtgtgtgtatatatgtgtgtgtatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtataattcaTATAAATCTGAATAATTGTAGcaattttttaataatgattacTTGCATCTAATAGAtctaatacaatacaatacaacaatACAATAATTCATAACTAATAcaataatttgttaaaataaactgcatttatttagtcTTTCATAATTTgccatatataataaataattaatatcagttttcaaaacaaatgaaaagttCCAGTACTGATGTTCTTGTACTTGTTCACAGATGTGGAGACCGTCACACTGTTGCTTGATTCTGGCTCTGTGGGCTTGTTTGGATGCACTGCCAGTTGCTGTGGATAAAACCAAAGTGAGCCCTCCAGCAGAGGCACAGGAACCACCTGAAAATGCAGACACCGGCTTGCACTATGATCGATATCTCAGAGAGGTTATCGATTTCCTGGAAAAGGACCCGCATTTCAGAGAGAAACTTCATAACACCGACATGGAAGATATCAAGCAAGGAAAGCTGGCGAAAGAGTTGGACTTTGTCAGCCATAATGTGCGAACGAAACTTGATGAGCTGAAGAGGCAAGAAGTGAACAGACTGCGGACCTTAATCAAAGCCAAACAAGACCTAAATGGAGAAAAAGgTATGACCGTGGACCACCAAGCACTTCTGAAACAGTTTGAGCATCTGAATCACATGAATCCACACACATTTGAGGTGGAAGATTTGGATCGCCTCATTAAATCGGCCACCAATGACCTAGAGAACTTTGACAAGGAAAGACATGAAGAGTTCAAAAGGTACGAGATGATGAAGGAACATGAACGGAGGGAACATCTTAAAACAATGAACGAGGAAGAGCGCAAAAAAGAAGAGGAACATTATGAAGAGATGAAGAAGAAACATGCAGACCATCCCAAACTCAATCATCCTGGCAGTCAAGACCAGCTGAAGGAGGTCTGGGAGGAAGCCGATGGTTTGGATCCCAATGATTTCGATCCAAAGACATTCTTCAACTTGCACGACACTAATGGTGATGGATATTTCGATGAGCAAGAGCTGGAAGCACTGTTTACCAAAGAGCTGGAGAAGATCTATGACCCCGCACAAGAAGAGGATGATATGGTGGAGATGGAGGAGGAGAGACTGAGGATGAGAGAGCATGTGATGAATGAGGTTGACACTAACAAAGACAGGCTTGTTTCACTTGAGGAATTTATTACTGCCACGAACAAGAAGGAATTTCTAGAGCCAGATGAATGGGAGACTCTAGATCAGAATCCAGTCTACACTGAAGAAGAGCTGAGAGAGTTTGAGCAGCATCTCGCTCGAGAAGAACAAGACCTGAACCTGAGGACAAATGACCTGCAGAAGCAGAGAGAGGAGCTGGAGAGACAACAGGATCAGCTCAACGCCCAGAAGATGGAACTACAGCAGGCAGTACAACACATGGAGCGGCTGAAAGCACAGAAAACAGAGCCTCCAGTGCAGCCCAAAGCTCTGTCCGCTGTGGAGATTTTACCTGGTGATGGTCAGCAGTTGTCGCAGGACCTTCCTCCACATTCTTAGCAGCTCAAGCTCTCCTGAATGTCTGTAATGTGTATGTGTGCTGTATGTAGAGTTAAACATTTCCATCCTCACATTCAATGTACTGTCTCATAGGAAATGCATTGGCATCAAACACAAAGCAACATTCAACAACCATGAATATTGAAACGTGATAAACAGAACTATCAGTGGACGGTTACACTTTTGACtatgttgttgtttgtgaggaTAGGGATTGTACTTGAATCTTGTGCTCAAAGAAAgttgattgtattttattgtttaattgtcATGTCTGATTTGCACAAACACAGCCAAACCTCATAGgataaatctttttattttagttaacgcATAATTCAGGATTCCTTTCATAAAGTACGTCCAATGCTAAACATATTCTGGTGTAAAACAAATTTGTAGAAAATATGATATCCATCCCAGGATATCAGTAATTATACCATCACTGTTTCAAGTGAATAATCAACAGCTTTTTGTGGACACTTTCATGCTAGAAATGACAGAACACTGCCTTTAAAATAGCcacaaaaatgtacacatttcTAAAACACGCAGAAATCGATAGTTCATATATGAGAACGTTTGGCTTGTTTGAGTATCCTTTGTGGGTTCCAGAGTATTATTGTcgtttaaatttctttaaaatttattaaattatgtcaGCTTC
>TCONS_00025822
AATTATTTCTGAAGTATCATCAACTTTATCACAggaataaatagcattttaaactagatttaatacactttttttaaactgtaatgaTTTTTAGAGATCACAGTTTTACTGTTGTTCACAGCCTTTAGTGAGCATTTAAATACGTTCATGAACAGTTGGGCGGGTGAACCAGAacttttatttcaatatgttgatgtacttctaactAAAACAGACTATTAAGTAGTGGCAGGGTTTtcttttttgattattattggagattactaaaataaactttgtttttCTTCAATGTATTAATTTGCACTGAtttattgttcacctaaagaataaacaaaataaacattgtacattttgatttcacacagactttaaaattCTTACCAGCTGAAATCACTGTAGTGATTATGTACTATATAGAAGTCGTCTTTACAGTGTCATTTGTCTGCCTCCTCTTGAGACTCTAGATCAGAATCCAGTCTACACTGAAGAAGAGCTGAGAGAGTTTGAGCAGCATCTCGCTCGAGAAGAACAAGACCTGAACCTGAGGACAAATGACCTGCAGAAGCAGAGAGAGGAGCTGGAGAGACAACAGGATCAGCTCAACGCCCAGAAGATGGAACTACAGCAGGCAGTACAACACATGGAGCGGCTGAAAGCACAGAAAACAGAGCCTCCAGTGCAGCCC

Function

symbol description
nucb2b Predicted to enable calcium ion binding activity. Acts upstream of or within response to food. Predicted to be active in endoplasmic reticulum-Golgi intermediate compartment. Is expressed in several structures, including brain; digestive system; endocrine system; heart; and yolk syncytial layer. Orthologous to human NUCB2 (nucleobindin 2).

GO:

id name namespace
GO:0032094 response to food biological_process
GO:0005793 endoplasmic reticulum-Golgi intermediate compartment cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4775 Predicted to enable calcium ion binding activity. Acts upstream of or within response to food. Predicted to be active in endoplasmic reticulum-Golgi intermediate compartment. Is expressed in several structures, including brain; digestive system; endocrine system; heart; and yolk syncytial layer. Orthologous to human NUCB2 (nucleobindin 2).

Ensembl:

ensembl_id ENSDARG00000036291

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025820 False 2090 mRNA 0.42 13 38191346 38210092
TCONS_00025821 False 2729 mRNA 0.39 12 38192499 38210087
TCONS_00025822 True 685 lncRNA 0.37 2 38206289 38208100

Neighbor

gene id symbol gene type direction distance location
XLOC_012967 CR381582.2 coding upstream 173328 38017901 ~ 38018018 (+)
XLOC_012966 CR381582.1 coding upstream 228449 37962778 ~ 37962897 (+)
XLOC_012965 AL627088.2 coding upstream 732784 37458446 ~ 37458562 (+)
XLOC_012964 NA coding upstream 828318 37358896 ~ 37363028 (+)
XLOC_012963 NA coding upstream 910180 37272515 ~ 37281166 (+)
XLOC_012969 lmo2 coding downstream 78785 38288877 ~ 38296665 (+)
XLOC_012970 alx4b coding downstream 110947 38321039 ~ 38364462 (+)
XLOC_012971 NA coding downstream 193233 38403325 ~ 38518803 (+)
XLOC_012972 NA coding downstream 538521 38748613 ~ 38754692 (+)
XLOC_012973 onecut1 coding downstream 544931 38755023 ~ 38760271 (+)
XLOC_012980 NA non-coding downstream 955271 39165363 ~ 39173192 (+)
XLOC_012984 NA non-coding downstream 1411373 39621465 ~ 39632025 (+)
XLOC_012986 FO905036.1 non-coding downstream 1526297 39736389 ~ 39736503 (+)

Expression


Co-expression Network