XLOC_012998 (si:ch211-132b12.3)


Basic Information

Item Value
gene id XLOC_012998
gene name si:ch211-132b12.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 40584288 ~ 40604363 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025869
CTCCACCAATATACAGTTAACACTGACAGAAAGATCATTGAAAACTGGAAGTGTTGGAGAGAAGAAATGAACACAATTAAAGGACAAACAGAGGAGCGAGGGTTCTGGGGCAGAAAAGCAGAGTTTCTTCTGGCTGTGGCAGGAAATGTGGTTGGAGTGGGTAACGTGTGGAGGTTTCCTTACCTTTGCTACAGAAATGGAGGAGGGGTGTTCCTTATACCCTATCTGGTGTTTGTGATGACCTGTGGAGTGCCTCTGTTCCTGCTGGAGACAGTCATGGGGCAGTTCACACATGAAGGGGGCATTACATGCTGGCATCTCCTCTGTCCACTGGCTCAGGGTGTTGGCTATGCAGGACAGCTCATAGAGCTGTACAGCTGCATGTATTTTACCATCATTCTGGCCTGGGCGCTTTTTTATCTCATCTTCTCTTTCAGCTCACAACTGCCGTGGGCCAGCTGTGACAACATCTGGAACACAGACAACTGTGTAAATCTTGCTGCAGGAAATCTTACTTTCAACCGAACAACACAGATTAATTCAACATCTGCAGCTACTGAGTTCTGGGAACGCAGAGTTCTGTCTCTCTCTGGAGGTATTGAGGAGATCGGCAAGATCAACTGGGAGATTGCTTTATGCCTCTTCGTAATGTGGATCATATGTTATTTCTGCATCTGGAAAGGAGTCAAATCTACAGGCAAGGTGGTGTATTTCACAGCTACATTTCCTTATGTGATGCTGCTTGTGTTGCTGATTCGTGGGTTGACTCTTCCTGGAGCTCTGCAGGGGGTTGTGTTTTACTTGTACCCTGAACCGGCTCATCTTGCTGACCCACAGgtttgGATGGAGGCAGGAACTCAGGTCTTCTTTTCATATAGTCTATGTAGTGGTATTCTCATTGCACTTGGCAGCTATAATCAATACAGCAACAACTGCTACAGAGACTCCTTTTGGCTTTGCCTTCTGAACAGTGGCACCAGTTTTGTGGCTGGTTTTGCTGTGTTCTCAGTCTTGGGCTTCATGGCTCATGTGCAGGGCGTCCCTGTTGAAGAAGTAGCAGAATCCGGTCCAGGACTAGCATTCATTGCTTATCCACAGGCAGTGGCCATGATGCCCTTCCCTCAGTTGTGGGCTGTTTGCTTCTTCatcatgattattttgcttgGCCTAGATTCACAGTTTGTTGCAATGGAGTGTGTGGTTACATCAGTGACGGACTTGTTCCCTGAGGTGCTGCGCAGAGCTGGTCGTCGGGAACTGTTTGTCCTGCTCCTCTGTCTCACATGTTTCTTTGGACAACTCATCATGGTtacagagGGGGGGATGTATGTATTCCAGCTGTTTGATAACTATGCCAGTAATGGAGCCTGTTTTCTGTTCCTCTCTGTGTTTGAGTCTTTGACCATCGGTTGGATCTTCGGGGCTGAaaaaatgtttgacataatcAAGGACATGACAGAGTCACGACCCAACTACTGGTTCATGCTGTGCTGGAAATACTTGACTCCACTTGTGTCCCTGACGTCTTTTGTTTATTCTATGGTGAGGTACACACCTCTGACTTATAACCGCTGGTATGTGTACCCGGACTGGGCACATGTACTTGGCTGGTTACTGGCTCTGTCCTCCATTCTGCTGGTGCCTGGATGGGCACTGGGCCAAATGTGTACTGGTAAAGGCAGCCTGAAACAGCGTTGGGGCCACTTGTGTAGTCCTGACACAAATCTCATGCTCTCCTCTATACAAATACAGGAACAAACTGCAGAGATGGAAGACTTAGTCAGGAGCAGCACAATATAAAGCATTACATGGGAGCACAAAAAGTTTctgaaaaataacaaatgttgtgttagtatatatacatatgttagtatatatatatatgtgtgtgtgtgtatacacacatacagtcgaagtcagaattaatggcccatcttagattttttttttcttttttaaatattttttaaattgtgtttaacagaacaaggaaattttcacagtaagt

Function

symbol description
si:ch211-132b12.3 Predicted to enable gamma-aminobutyric acid:sodium symporter activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Orthologous to human SLC6A13 (solute carrier family 6 member 13).

GO:

id name namespace
GO:0006810 transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0043005 neuron projection cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0042165 neurotransmitter binding molecular_function
GO:0015293 symporter activity molecular_function
GO:0005328 neurotransmitter molecular_function
GO:0005332 gamma-aminobutyric acid molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050419-161 Predicted to enable gamma-aminobutyric acid:sodium symporter activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Orthologous to human SLC6A13 (solute carrier family 6 member 13).

Ensembl:

ensembl_id ENSDARG00000068363

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025869 True 2008 mRNA 0.45 14 40584288 40604363

Neighbor

gene id symbol gene type direction distance location
XLOC_012997 si:ch211-132b12.2 coding upstream 1184 40572294 ~ 40583104 (+)
XLOC_012996 si:ch211-132b12.1 coding upstream 18512 40552620 ~ 40565776 (+)
XLOC_012995 vwa7 coding upstream 43585 40525408 ~ 40540703 (+)
XLOC_012994 NA coding upstream 63660 40518736 ~ 40520628 (+)
XLOC_012993 ugt5c3 coding upstream 106423 40471826 ~ 40477865 (+)
XLOC_012999 si:ch211-132b12.4 coding downstream 4790 40609153 ~ 40613189 (+)
XLOC_013000 zgc:158427 coding downstream 13354 40617717 ~ 40638096 (+)
XLOC_013001 si:ch211-132b12.6 coding downstream 39297 40643660 ~ 40660847 (+)
XLOC_013002 NA coding downstream 63704 40668067 ~ 40669736 (+)
XLOC_013003 NA coding downstream 156278 40760641 ~ 40763051 (+)
XLOC_012992 BX323575.2 non-coding upstream 117384 40466790 ~ 40466904 (+)
XLOC_012988 BX005280.1 non-coding upstream 560400 40023772 ~ 40023888 (+)
XLOC_012986 FO905036.1 non-coding upstream 847785 39736389 ~ 39736503 (+)
XLOC_012984 NA non-coding upstream 952263 39621465 ~ 39632025 (+)
XLOC_013004 NA non-coding downstream 297535 40901898 ~ 40902607 (+)
XLOC_013006 NA non-coding downstream 584376 41188739 ~ 41227202 (+)
XLOC_013015 CU326349.3 non-coding downstream 1053124 41657487 ~ 41659824 (+)

Expression


Co-expression Network