XLOC_013001 (si:ch211-132b12.6)


Basic Information

Item Value
gene id XLOC_013001
gene name si:ch211-132b12.6
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 40643660 ~ 40660847 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025873
TCCTCCACTAATATAGTTACCGCTGACAGAAGCATCATTGGAAACTGGAAGTGTTGGAGAGAAGAAATGAACCCAATCAAAGAAGAAATAGAGGAGCGAGGGTTCTGGGGCAAAAAAGCTGAGTTTCTTCTGGCTGTGGCAGGAAATGTAGTTGGACTGGGTAACGTGTGGAGGTTTCCTTACCTCTGCTACAGAAATGGAGGAGGCGTGTTTCTGATACCATACCTGGTGTTTGTGGTGACCTGTGGGCTGCCTCTGTTCCTGCTGGAGACGGCTATGGGGCAGTTCACACATGAAGGAGGCATTACATGTTGGCATCGCCTCTGTCCACTGGCTCAGGGTGTTGGCTATGCAGGACAGCTCACAGTACTTTACAGCTGCATGTATTACACCATCATTCTGGCCTGGGCACTTTTCTATCTCGTCTCTTCTTTCAGCTCACAACTGCCGTGGGTCAGTTGTAACAACATCTGGAACACAGaCAACTGTGTAAATCTTGCTGCAGGAAATCTTACTTTCAACCGAACAACACTGGCTAATTCAACATCTGCAGCTACCGAGTTCTGGGAACGCAGAGTTCTATCTCTCTCTGGAGGTATTGAGGATATCGGCAAGATCAACTGGGAGATTCTTCTGTGTCTCATTGCAATGTGGATCATATGTTATTTCTGCATCTGGAAAGGGGTCAAATCTACAGGCAAGGTGGTGTATTTCACAGCTACATTTCCTTACGTGATGCTGCTTGTGTTGCTGATTCGTGGGTTGACTCTTCCTGGAGCTCTGCAGGGGGTTGTGTTTTACTTGTACCCTGAACCAGCCCGCCTTGCTGACCCACAGgtttGGATGGAGGCAGGAACTCAGGTCTTCTTTTCCTACAGTGTGTGTAGTGGCATTCTCATTTCACTTGGCAGCTATAATCAATACAGCAACAACTGCTACAGGGACTCCTTTTGGCTTTGCCTTCTGAACAGTGGCACCAGTTTTGTGGCTGGGTTTGCTGTGTTCTCAGTCTTGGGCTTCATGGCTCATGTGCAGGGCGTCCCTGTTGAAGAAGTAGCAGAATCAGGTCCAGGATTAGCTTTCATTGCTTATCCACAGGCAATGGCTATGATGCCCTTCCCTCAGTTGTGGGCTGTTTGCTTCTTCATCATGATTATTTTGCTAGGCCTAGATTCACAGTTTGTCGGAATAGAGTGTGTGATTACTTCAGTGATGGACTTGTTCCCTGAGGTGCTGCGCAGAGCTGGTCGTCGAGAACTTTTTGTCCTGCTCCTCTGTCTCACTTGTTTCTTTGGACAACTCATCATGGTTACAGAGGGGGGGATGTATGTATTCCAGCTGTTTGATAACTACGCCTGTAATGGAGCCTGTCTTCTGTTCCTGTCTGTGTTTGAGTCTCTGGCCATCGGTTGGCTCTTCGGGGCTGAGAAAATGTTTGACATAATCGAGGACATGACAGAGTCACGACCCAACTACTGGTTCATGCTGTGCTGGAAATACTTGACTCCTCTTGTGTCTCTGATGTCTTTTGTTTATTCTATGGTGAGGTACACACCTCTGACTTTTAACCGCTGGTATGTGTACCCGGACTGGGCATATGCACTAGGCTGGTTATTGGCTCTGTCCTCCATTCTGCTGGTGCCTGGATGGGCGCTGGGCCAAATGTGGGCTGGTAAAGGAACCCTGAAACAGCGTTGGGGCCACTTGTGTAGCCCTGAGACAAAGCTCATGCTCTCCTTTAAACAAATACAGGACCAATTTGCAGAGATGGAAGACTTGGTCAAGAGCAGCACAATATAAAGCATTCTACGGGGGTACAATCGGTCTCTGAAACATAGCGAATGTCatgttagtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatacatacacacacacactcaca

Function

symbol description
si:ch211-132b12.6 Predicted to enable gamma-aminobutyric acid:sodium symporter activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Orthologous to human SLC6A13 (solute carrier family 6 member 13).

GO:

id name namespace
GO:0006810 transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0043005 neuron projection cellular_component
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0042165 neurotransmitter binding molecular_function
GO:0015293 symporter activity molecular_function
GO:0005328 neurotransmitter molecular_function
GO:0005332 gamma-aminobutyric acid molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050420-179 Predicted to enable gamma-aminobutyric acid:sodium symporter activity. Predicted to be involved in sodium ion transmembrane transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in neuron projection. Predicted to be integral component of plasma membrane. Orthologous to human SLC6A13 (solute carrier family 6 member 13).

Ensembl:

ensembl_id ENSDARG00000094546

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025873 True 1975 mRNA 0.45 14 40643660 40660847

Neighbor

gene id symbol gene type direction distance location
XLOC_013000 zgc:158427 coding upstream 5564 40617717 ~ 40638096 (+)
XLOC_012999 si:ch211-132b12.4 coding upstream 30471 40609153 ~ 40613189 (+)
XLOC_012998 si:ch211-132b12.3 coding upstream 39297 40584288 ~ 40604363 (+)
XLOC_012997 si:ch211-132b12.2 coding upstream 60556 40572294 ~ 40583104 (+)
XLOC_012996 si:ch211-132b12.1 coding upstream 77884 40552620 ~ 40565776 (+)
XLOC_013002 NA coding downstream 7220 40668067 ~ 40669736 (+)
XLOC_013003 NA coding downstream 99794 40760641 ~ 40763051 (+)
XLOC_013004 NA coding downstream 241051 40901898 ~ 40902607 (+)
XLOC_013005 si:dkey-283j8.1 coding downstream 332349 40993196 ~ 41051768 (+)
XLOC_013006 NA coding downstream 527892 41188739 ~ 41227202 (+)
XLOC_012994 NA non-coding upstream 123032 40518736 ~ 40520628 (+)
XLOC_012992 BX323575.2 non-coding upstream 176756 40466790 ~ 40466904 (+)
XLOC_012988 BX005280.1 non-coding upstream 619772 40023772 ~ 40023888 (+)
XLOC_012986 FO905036.1 non-coding upstream 907157 39736389 ~ 39736503 (+)
XLOC_012984 NA non-coding upstream 1011635 39621465 ~ 39632025 (+)
XLOC_013015 CU326349.3 non-coding downstream 996640 41657487 ~ 41659824 (+)

Expression


Co-expression Network