XLOC_013005 (si:dkey-283j8.1)


Basic Information

Item Value
gene id XLOC_013005
gene name si:dkey-283j8.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 40993196 ~ 41051768 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025874
ATGGAACAGAAGTTTCCTCCGAAAGTAAAACTAAGAACAACATCACTAAGGAGAGATGCAGCTGAGCTCGTCCACTTTGCTCAGATAAGGAGGAGAAAAGCTCAGTGGCTGGTTTCTGGGATGTTAAGTCTGTCTTTGCTAATAGTTGTGATGGGCATCTACATCAGTACACGCACGGAAAGTGTCAGCATCACAGGATACATTTCAGGCATTATTTTGGCGTTTGGATCGTTCTTGGGAGTTCTTGGACTGAGCTTGGAGGAAAACCGCAAACAGCTGTTAGTTGCATCCATCGTGTTCCTGAGTTTTGGGATAATTTCCAGCTTCCTGTGTCTTCTGATTGATGGCGTTTTCATTCTGCTCAACATTGATATGCGTCCCATGAAGGCAGGAAGATGTCAGTTCTACACCAGTGGAAACAGTTACATCTATGAAAACTACTACGCTACAGTTCCCTGTCAAGGACTAACAGAGTCCTGTAATATGAAAGTTCGCAGTGGAACGTGTTACTGTTGTGATTTGTATGATTGTGCCAATGGAGGATATCTGAATAATTACTATGAGTTTGTGGGTGTGCAGAGCTGTCAGGAGGTGCTCTCTCTGTATGTTCTACTCTGGGTTTTAACTGCTCTCAACCTGCTGGCCTTCGTGCTTGGGATCCTGACCACTGCTGTACTGGGCAGTATCAAAGACATGGTGAGTCatgaacactCACACTTCAGTTTAATTTTGTCAATAGATGTCCACAATTGTAAAAACCACAGACATCCCAATCCTTCCCAAATCTGTACAGAGAATGTCAGATGA
>TCONS_00025875
ATAGCAGTGAGGGATTCCGTGTGgattataaacatttataacGAGGAGGACAGATGACAAACTCACAGGAAACGACACGGCGCGATGCTGCTCCACCACACACTGTCGCAGATGTGTTAAAGATAAGGAGGAGAAAAGCTCAGTGGCTGGTTTCTGGGATGTTAAGTCTGTCTTTGCTAATAGTTGTGATGGGCATCTACATCAGTACACGCACGGAAAGTGTCAGCATCACAGGATACATTTCAGGCATTATTTTGGCGTTTGGATCGTTCTTGGGAGTTCTTGGACTGAGCTTGGAGGAAAACCGCAAACAGCTGTTAGTTGCATCCATCGTGTTCCTGAGTTTTGGGATAATTTCCAGCTTCCTGTGTCTTCTGATTGATGGCGTTTTCATTCTGCTCAACATTGATATGCGTCCCATGAAGGCAGGAAGATGTCAGTTCTACACCAGTGGAAACAGTTACATCTATGAAAACTACTACGCTACAGTTCCCTGTCAAGGACTAACAGAGTCCTGTAATATGAAAGTTCGCAGTGGAACGTGTTACTGTTGTGATTTGTATGATTGTGCCAATGGAGGATATCTGAATAATTACTATGAGTTTGTGGGTGTGCAGAGCTGTCAGGAGGTGCTCTCTCTGTATGTTCTACTCTGGGTTTTAACTGCTCTCAACCTGCTGGCCTTCGTGCTTGGGATCCTGACCACTGCTGTACTGGGCAGTATCAAAGACATG

Function

symbol description
si:dkey-283j8.1 Predicted to be located in membrane. Predicted to be integral component of membrane.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000076050

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025874 False 807 mRNA 0.44 9 40993196 41051768
TCONS_00025875 True 734 mRNA 0.45 7 40993369 41047681

Neighbor

gene id symbol gene type direction distance location
XLOC_013004 NA coding upstream 90589 40901898 ~ 40902607 (+)
XLOC_013003 NA coding upstream 230145 40760641 ~ 40763051 (+)
XLOC_013002 NA coding upstream 323460 40668067 ~ 40669736 (+)
XLOC_013001 si:ch211-132b12.6 coding upstream 332349 40643660 ~ 40660847 (+)
XLOC_013000 zgc:158427 coding upstream 355100 40617717 ~ 40638096 (+)
XLOC_013006 NA coding downstream 136971 41188739 ~ 41227202 (+)
XLOC_013007 trip12 coding downstream 180951 41232719 ~ 41310976 (+)
XLOC_013008 veph1 coding downstream 262231 41313999 ~ 41465606 (+)
XLOC_013009 si:ch211-203b8.6 coding downstream 444073 41495841 ~ 41509800 (+)
XLOC_013010 ccnl1a coding downstream 460334 41512102 ~ 41526488 (+)
XLOC_012994 NA non-coding upstream 472568 40518736 ~ 40520628 (+)
XLOC_012992 BX323575.2 non-coding upstream 526292 40466790 ~ 40466904 (+)
XLOC_013015 CU326349.3 non-coding downstream 605719 41657487 ~ 41659824 (+)
XLOC_013016 CU326349.2 non-coding downstream 616416 41668184 ~ 41668309 (+)
XLOC_013017 CU326349.1 non-coding downstream 661308 41713076 ~ 41713190 (+)
XLOC_013020 CABZ01027964.1 non-coding downstream 879951 41931719 ~ 41931833 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000028_05582125_05613508 NA coding CI01000028 null 5581890 ~ 5613568 (-)