XLOC_013022


Basic Information

Item Value
gene id XLOC_013022
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 42639068 ~ 42640691 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00026929
CGGGTAGCCATGCTGCTGACAAATTTAGCTCTTGTCCATGTGTCATGTTTGGAAAAACCAAGTCAAGTCTAACTTTGTTAAGCTAAGTTCAATTTgactacaaaataaaatacaagacaGCATGACACTTAACCAGACCTATCTCTATTTACACATGTAAATGATAATTTTTggtcaaatataaacaaacaacttttttttttttttttttttaagtgcagttAAGTGAGCATCGTTACTCCCTAATTTTCATGCAGAATTTTGTGACTTTTCAGAGAGTAAATGTTTaagtacactggaaaaaaaatgtgGTTAATCATGGAGGCGGTCATTTTAAAGACTGTCTCAGTTTCCTGTCCACTGAATACAGGAACTGCTTGAGATGCACATCTAGATTCTATAGTCACTTTTATTGGCTAATGACCAATCAGAAACTGTCTCGGAGAAATGTTATACTATAACACACAGGATAAGGGATTAAAGGCCTATTTGAAGCAGGAACAGATGACAACAAAGTCTAATTACAGGTTTACAGTTTTAAGATTTCAAGTTTTTAAGATATTAATGCTCTCTTCCAGAAGGCCCATGGGATCTGACTCTTCTTACCTTTCCTTGCTCTTTCAAGTCTACATCCCATCGTGAAGCCAGCAGTTGTTACATGAGGGtcacctcagggtaccatccCAGACAGGCACAAAATCACTTTCCTGGACCTTTTCATTCACTGTTTCTCAATGGTAGAATGATCTCCTCAACCTCTTGTGAAATGTCAAATCCCTGACAATACTCATGAGTTTTCACTTTTCTCTTATCTTCTATGAGCACTTACTGcattgtgttaaataaaaataatggtgTAAGGTCTGAGGCAGACACTATGTGTTGTAGCTAGGGACCTATTGTTTAGTTTATTCATCAGTCTCTGTTTGAGACTTGCATGCAAACTGCACTGCAATCATTTTACAAAGCtagtaacaaaaaaatgtaaatggagCAATTAAGGAAGCCAGAAATGCTAAGGATTAAGCTAGCCATGAAAAACCTCCATTGAGAATCCATTATCTCCCTTTTTGTTGGACTTCATGTTATCTCTCTGCAGGTTGTAATATATACAATCACTCCAGGGCCTTCACACATCTATTTCTAAATCATTGGCTGATTCTGATGCCGATACCAATGCCGATATTTGTCAGTTGCATACAGTACTATTTTTTCCTCATTAAATTAGTTTTAGAGTAGTTCAGGCACAGAttaggatgaaaaaaaaaatacaatttgacATCTCTAAAGGTGTTGTTTTGCTATTCAATATTTCCTTTAATAACAGTGACTTATTTGGCCTAtgaaatctaacattgtgtacaTGTTAGactgattatattttatatgtaaaaatgtaGGATTATTCAAAATATGTGCAGCTCATTTCctat
>TCONS_00027152
AGCCATGCTGCTGACAAATTTAGCTCTTGTCCATGTGTCATGTTTGGAAAAACCAAGTCAAGTCTAACTTTGTTAAGCTAAGTTCAATTTgactacaaaataaaatacaagacaGCATGACACTTAACCAGACCTATCTCTATTTACACATGTAAATGATAATTTTTggtcaaatataaacaaacaacttttttttttttttttttttaagtgcagttAAGTGAGCATCGTTACTCCCTAATTTTCATGCAGAATTTTGTGACTTTTCAGAGAGTAAATGTTTaagtacactggaaaaaaaatgtgGTTAATCATGGAGGCGGTCATTTTAAAGACTGTCTCAGTTTCCTGTCCACTGAATACAGGAACTGCTTGAGATGCACATCTAGATTCTATAGTCACTTTTATTGGCTAATGACCAATCAGAAACTGTCTCGGAGAAATGTTATACTATAACACACAGGTGAAATTTACATAGAATCTGGCTTGCATCAAGTTTTAGGCAGATGAGATGTAATATCATATCCTTCTTCCAAGGATAAGGGATTAAAGGCCTATTTGAAGCAGGAACAGATGACAACAAAGTCTAATTACAGGTTTACAGTTTTAAGATTTCAAGTTTTTAAGATATTAATGCTCTCTTCCAGAAGGCCCATGGGATCTGACTCTTCTTACCTTTCCTTGCTCTTTCAAGTCTACATCCCATCGTGAAGCCAGCAGTTGTTACATGAGGGtcacctcagggtaccatccCAGACAGGCACAAAATCACTTTCCTGGACCTTTTCATTCACTGTTTCTCAATGGTAGAATGATCTCCTCAACCTCTTGTGAAATGTCAAATCCCTGACAATACTCATGAGTTTTCACTTTTCTCTTATCTTC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00026929 False 1433 lncRNA 0.35 2 42639068 42640691
TCONS_00027152 True 885 lncRNA 0.36 2 42639073 42640074

Neighbor

gene id symbol gene type direction distance location
XLOC_013021 NA coding upstream 547857 42071728 ~ 42091211 (+)
XLOC_013020 CABZ01027964.1 coding upstream 707235 41931719 ~ 41931833 (+)
XLOC_013019 pgr coding upstream 800649 41820039 ~ 41838419 (+)
XLOC_013018 trpc6b coding upstream 830327 41768357 ~ 41808741 (+)
XLOC_013017 CU326349.1 coding upstream 925878 41713076 ~ 41713190 (+)
XLOC_013023 NA coding downstream 12463 42653154 ~ 42653955 (+)
XLOC_013024 NA coding downstream 131625 42772316 ~ 42772733 (+)
XLOC_013025 BX322577.1 coding downstream 132903 42773594 ~ 42779530 (+)
XLOC_013026 NA coding downstream 146622 42787313 ~ 42792357 (+)
XLOC_013027 nectin1b coding downstream 329517 42970208 ~ 43226503 (+)
XLOC_013016 CU326349.2 non-coding upstream 970759 41668184 ~ 41668309 (+)
XLOC_013015 CU326349.3 non-coding upstream 979244 41657487 ~ 41659824 (+)
XLOC_013029 NA non-coding downstream 809396 43450087 ~ 43456039 (+)

Expression


Co-expression Network