XLOC_013025 (BX322577.1)


Basic Information

Item Value
gene id XLOC_013025
gene name BX322577.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007129.7
NCBI id CM002902.2
chromosome length 51023478
location 42773594 ~ 42779530 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00025900
GGCAAGAATAGGACCACCAGTTCTAGTTTTCATCCTCACTGTGAAAAATGTCACAATTGGAACTGCAAGTTTCCCATAGAAATCTCAACATCTTGTATTTTCATTTCCTGCCGCTTAAACTGTGGAGCTGCCTTCCACCTTTGTACAGAGGATGAGCATCGTCTTCTATGCCCTAAAGAAACAGTACCATGCCTCAACTCTGGTTATGGCTGTCCCATGACTATGACACGAAAAAGACTTGCCCAGCACCTAGAAGTGTGTCCTGCCAGTGTGGTTACATGTACCTTGGAATGGAACCGATGGCCGGTAAATGAGACTGATACCACCTTCTATAGGAATGCTCTACAGGATCCAAACTGGATGAGTCAGCTAGACCTTGCAATGGCCCTTAGAGATCAGAAGCTTCTCTTTGATTCAATCCAGATGAAGACACTGTTCCCTGAGTTGATAGAGAAGGTAGAGGAGCCTGAGGTTTCACTGGACGGTGCTGTTGGAGGACTTGATCCAGAGTGCTCAGAGTCTCAGATCTTAATCCCAGAAGAGTCGTTGGAGGATAGCCTTAATGGAGAAGAGATCAAAGAACTAACCCAAGAGGAACGTCTCGCTTTGGCTGAGAGTAAAGATGTAGCCTGCTTGGAGAACTACGGGATATGGGAGAGAATGTTTGCGAAGGAGAAGCAAGGGTGCAATCAGACAGTGAAGAAATTAGAGGATAAAAGTTGTCAGATTAAAGACAAGAATTCCCCTCAGAATTCCGACAATCTAGACATTGATAGGACAGGTTTAGCTCCTTGGCAAGATGGTGTTCTTGACAGGCTCCGTAAAGAGGTCAACGTGGCTGAGTATAATATGTATCTGGTCCACAACGGATGCATGCTTATCAACTTCGGCCAACTGGCAGCTTGCACGCCTAAAGAAAAAGATTTTGTTTATGGCAATTTAGAGCCCATTGAAGTTCAAACCATACACTCCTTCAATGTGCCCACCAGCTACAGAGCCAAACGTAGCCATCTGAAGGATCCATCCCAAATGATTAAAAAGACACACCGATCTGTGGACACATCTGATTTAGGCATTGCAACTGAAGTGCTTCCAAAGGCAAAAGTGGTAGAATCCACACTGCTGTGCTCTCTTGAAAGAGAATAAAAAGGTCATCAGATTTGTGAGAGTATTGGGATCGACGGGCTATATGTTGACGTTGGCACCCAAACCTTTGACTTCCATTCTGCTCCATTCAAAAGTGATGCAACTTTGGCCAATGTTGTTGCAGATCAGCCTCAAAGCCTACACGTGCAAATTCAAACCGAATGTGTGACTAGGAGGCACAACAAATTATGCTCAGCCTTTACTTACCTGTGCCATCATGCCTTCAGGCGTGAAGAATATCCCTGGCACTTTAGGAACGTGCATGGAGACATCCAATCATGCCTTACTGGCTGGTTTTTACAGCGGTGCCCACTGGCTTACCTCGGTTGCACCTTTAGCCAGAAGCAATTTCGGCCATCTAAATATCATGCCATTGTAAGCTATGATGCAGATCTTAGTACTTTCATCTTACAACCAGAAGTGACAGCATCTCTTTACAAAGGAGTAAAAACCGTTAACAGTGAACGCAAACGTGCCAAGAATTTGGATTCCTTGAGCAGACTTCCTTTTGAAATCTTGCAACACATAGTGAGTTTTCTGGATAGCATGTCTTTGGGTCGTCTATCTCAAGTTTCCCAGCTAATGAGGGAAGTTTGCAGTACTGTTCTTCAGCAGAAGGGCATGGTGTCACTCAAATGGGAGAAAAAGACATACTCTCATGGTGGATTCACTTGGAGGGCACGTAAAAAGGCATGGGAGTTCAGCAGTCTGTTCTCTCCGGTGGATAAATGGGTTTTTGAAGACATGCCCCCTATGGCAGAACACCTGAAGGTTTGTCCTTTCTACCAAAAGGAGATCAGAAGTGAACCTGTGGCGTTACCCAGTATGACAGATCTCCCGGAGAGAAGAGAGGAATTCCAGACTCTAGtcaacaatagcccctttcacacagtgatacc
>TCONS_00027154
GGCAAGAATAGGACCACCAGTTCTAGTTTTCATCCTCACTGTGAAAAATGTCACAATTGGAACTGCAAGTTTCCCATAGAAATCTCAACATCTTGTATTTTCATTTCCTGCCGCTTAAACTGTGGAGCTGCCTTCCACCTTTGTACAGAGGATGAGCATCGTCTTCTATGCCCTAAAGAAACAGTACCATGCCTCAACTCTGGTTATGGCTGTCCCATGACTATGACACGAAAAAGACTTGCCCAGCACCTAGAAGTGTGTCCTGCCAGTGTGGTTACATGTACCTTGGAATGGAACCGATGGCCGGTAAATGAGACTGATACCACCTTCTATAGGAATGCTCTACAGGATCCAAACTGGATGAGTCAGCTAGACCTTGCAATGGCCCTTAGAGATCAGAAGCTTCTCTTTGATTCAATCCAGATGAAGACACTGTTCCCTGAGTTGATAGAGAAGGTAGAGGAGCCTGAGGTTTCACTGGACGGTGCTGTTGGAGGACTTGATCCAGAGTGCTCAGAGTCTCAGATCTTAATCCCAGAAGAGTCGTTGGAGGATAGCCTTAATGGAGAAGAGATCAAAGAACTAACCCAAGAGGAACGTCTCGCTTTGGCTGAGAGTAAAGATGTAGCCTGCTTGGAGAACTACGGGATATGGGAGAGAATGTTTGCGAAGGAGAAGCAAGGGTGCAATCAGACAGTGAAGAAATTAGAGGATAAAAGTTGTCAGATTAAAGACAAGAATTCCCCTCAGAATTCCGACAATCTAGACATTGATAGGACAGGTTTAGCTCCTTGGCAAGATGGTGTTCTTGACAGGCTCCGTAAAGAGGTCAACGTGGCTGAGTATAATATGTATCTGGTCCACAACGGATGCATGCTTATCAACTTCGGCCAACTGGCAGCTTGCACGCCTAAAGAAAAAGATTTTGTTTATGGCAATTTAGAGCCCATTGAAGTTCAAACCATACACTCCTTCAATGTGCCCACCAGCTACAGAGCCAAACGTAGCCATCTGAAGGATCCATCCCAAATGATTAAAAAGACACACCGATCTGTGGACACATCTGATTTAGGCATTGCAACTGAAGTGCTTCCAAAGGCAAAAGTGGTAGAATCCACACTGCTGTGCTCTCTTATTTGTGAGAGTATTGGGATCGACGGGCTATATGTTGACGTTGGCACCCAAACCTTTGACTTCCATTCTGCTCCATTCAAAAGTGATGCAACTTTGGCCAATGTTGTTGCAGATCAGCCTCAAAGCCTACACGTGCAAATTCAAACCGAATGTGTGACTAGGAGGCACAACAAATTATGCTCAGCCTTTACTTACCTGTGCCATCATGCCTTCAGGCGTGAAGAATATCCCTGGCACTTTAGGAACGTGCATGGAGACATCCAATCATGCCTTACTGGCTGGTTTTTACAGCGGTGCCCACTGGCTTACCTCGGTTGCACCTTTAGCCAGAAGCAATTTCGGCCATCTAAATATCATGCCATTGTAAGCTATGATGCAGATCTTAGTACTTTCATCTTACAACCAGAAGTGACAGCATCTCTTTACAAAGGAGTAAAAACCGTTAACAGTGAACGCAAACGTGCCAAGAATTTGGATTCCTTGAGCAGACTTCCTTTTGAAATCTTGCAACACATAGTGAGTTTTCTGGATAGCATGTCTTTGGGTCGTCTATCTCAAGTTTCCCAGCTAATGAGGGAAGTTTGCAGTACTGTTCTTCAGCAGAAGGGCATGGTGTCACTCAAATGGGAGAAAAAGACATACTCTCATGGTGGATTCACTTGGAGGGCACGTAAAAAGGCATGGGAGTTCAGCAGTCTGTTCTCTCCGGTGGATAAATGGGTTTTTGAAGACATGCCCCCTATGGCAGAACACCTGAAGGTTTGTCCTTTCTACCAAAAGGAGATCAGAAGTGAACCTGTGGCGTTACCCAGTATGACAGATCTCCCGGAGAGAAGAGAGGAATTCCAGACTCTAGtcaacctaatgtctttACAGCTG

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000078636

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00025900 False 2045 processed_pseudogene 0.45 2 42773594 42778763
TCONS_00027154 True 2013 lncRNA 0.45 4 42773594 42779530

Neighbor

gene id symbol gene type direction distance location
XLOC_013024 NA coding upstream 861 42772316 ~ 42772733 (+)
XLOC_013023 NA coding upstream 119639 42653154 ~ 42653955 (+)
XLOC_013022 NA coding upstream 132903 42639068 ~ 42640691 (+)
XLOC_013021 NA coding upstream 682383 42071728 ~ 42091211 (+)
XLOC_013020 CABZ01027964.1 coding upstream 841761 41931719 ~ 41931833 (+)
XLOC_013026 NA coding downstream 7783 42787313 ~ 42792357 (+)
XLOC_013027 nectin1b coding downstream 190678 42970208 ~ 43226503 (+)
XLOC_013028 si:ch211-129p13.1 coding downstream 586360 43365890 ~ 43440181 (+)
XLOC_013029 NA coding downstream 670557 43450087 ~ 43456039 (+)
XLOC_013030 NA coding downstream 859373 43638903 ~ 43746228 (+)
XLOC_013032 CR925719.1 non-coding downstream 1227042 44006572 ~ 44006688 (+)
XLOC_013033 NA non-coding downstream 1248848 44028378 ~ 44040502 (+)

Expression


Co-expression Network