CI01000319_05828294_05834113


Basic Information

Item Value
gene id CI01000319_05828294_05834113
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 5828007 ~ 5835085 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000319_05828294_05834113.mRNA
CTATATATGTACTAGCTAAATGTTTCAACCACTTGGCATTAAACGTTGTTTCAATGTTGTATTGCTGTTTCACCATTGAAACAACTGACATTATTTTAGCCACATTTCAATGTTAAAGTTCGGTCATGTGCCACCCAGTCTAAAGTGAGAGCCCACTGACATCTTCAACAGAAGCGTAAAGGCTGCTGGCTATATACTGGATATAAGTGGAAATTATCATTTTAAGCCTATATGTAGAGAATGCATTTTGAATAATTGCATCCATTTTTGTCTAGGAGGACCATACCATGATGCAGGTGGGCCTAGAACAGCGCAAACCACTGAGGACACTCTTCAGACTTCTGTCTCTGTCCAGACCTGATGTGGTACCAATATGTGGGGCTTTCCTGTTCCTTGTTGCAGCTGTTATCAGTGAAATGCTCATGCCATCATTTACTGGTCAAATAATTGACGCTTTGAATTCTAAATTTGATAGTAACACATTTGCAAGTGCAATTTTCTTCATGGGACTTACTTCTTTTGGAGGCTCTTTCTCAGCTGGATGTCGAGGTGGATTGTTCATGCTCACAATATCTAGGCTTACAAAAAGAGTCCGGCAACGTCTTTTTAGTTGTTTTGTTAAGCAAGACATTGCATTCTTTGAAACAACATCAAAAGGGGATATCACTACATGTTTGTCCAGTGATGCATCTCTGATGAGCCGGTCCCTGGCTGCAAATGTCAACATCCTCCTGCGCAGCCTTGTTATGACTATCGGCATCTACTGTTTCATGATTCAGCTCTGCTGGCCCTTGGCCTTGCTCAGTGCGCTTGAGTCACCAATTACTATCACTGCTGAGAAAATATACAACAAGTACTATCAGGGGCTGGTCAGCTCAGTGAAAAAATCCATAGTAAAAAGTAACCAGGTTGCTGGAGAAAGCATTTACCATATCAGAGCTGTCAGAAGTCATGGTGCTGAGATGGTGGAGCAGAAGATGTATAACGGCAGACTGGAAGAAACACACCATTTTAAAATACACAGAGATAGTGTCAGAGCTACTTACTTGCTGTTCATGAGGTTATTCCAGTTAGGTATGCGGGTGCTGATCTTGTGGTACGGGCATCAAATGATCAAATCTGGGCAAATGACACCTGGAAACCTTGTGTCCTTCATACTCTATCAGATGGAGATCGGAGGCTATGTACAAACATTAGTTGAACTACATATAGACCTTATAGAATCACTGGAGTCAGCTGATAAAGTCTTTGAGTATATGGACCACAAACCATCTGTTTTATGTGGTGATCTTGCACCTGACCAGCTCAAGGGACATGTGATGTTTAACAACATTAGCTTCTCTTATTCAACATGCCCAGACCAGAAAGCACTGGAGAATGTCTCATTTGAAATGAAACCAGGGTCAGTTACTGCACTAGTGGGTGTCTCAGGTGGGGGAAAAAGCACCTGTGTAGCCCTATTAAAGCATCTTTATGAGCCCCAGTCTGGTGAAATCCTCCTGGATGGAAGGCCCCTAAAGGATTATGATCACAAGTACTTTCACCAAAAGGTAGCTGTTGTGAGCCAAGAACCAGAGCTCTTTTCCTGCTCTATTCACAACAATATCACTTATGGACTTGGCAGTTATTCAGAAGATGTGCTGCAGACTGCAGTAAAACAGGCTCATATTAACAGCTTCGTACACTCTTTGAAAGATGGCTATGACACAGAGGTTGGAGAGCGTGGTGGTCTTCTCTCTGGGGGTCAGAAGCAGCGCATTGCTATTGCCAGAGCTCTGATCAGACAACCTCAGATCCTCATACTGGATGAGGTCACCAGTAGCCTGGACACTGAGAGCGAAAAGATGATCCAAAATGCCCTGGCATGTTTCACGACTCAAACCAGACTGATTGTGGCTCATAGGCTGAAGACCATTGAGAGTGCAGATCAAATAATAGTGATTGATAAAGGCTCGGTATCTGAGAAAGGCACCCACATGGAGCTGATGAAGAAGAAAGGAATCTACTACAAATTAAGAGAGAGTCGATTTAATGAAGACAACACTGAGACTACTTGTTAACCGATTGAGAAATAATAGAAAAGAATTCACATCCAAGGCAAGGGTGCAGGACACAGTGTAAAAAAACATGGAAAAGAGTGGAAATTTCCACACACTGATATTAAGTTTTGACCTTATTTTCCTCTTCACCAAATACATTGAAATATATTTATGTATAAACACATTGCATTAGCACATTTAGCATATTTTGCAAAAATAGAGCATATTCTGCTGTAATCTGTTTATATTACTTCTTTTGTTTTTTTTTAATTCTGCAGGATTTTAATTAGCTATTTGAAACCATTTCACAAGGATGAGTAGGCCTATATTTATAGAAACGGCATGCTAATCTAATGTTCTAATCTGGTTTTTATCATCATTACTTTTAAGAAATTAAAAACATATTTTAGAGAAATATTTATACCATGGTCTCTATGAATACTCAATTGTGATTGGCTGGATGGTGTTCAATAAAACCATTGAATGCACAGGTAGTTCCAAGTCAGTTTAATCCCTGTTCTATAGACTATTTGTGACTGCAATGATTGAACAAACATTTTTTGGTTTATTGATATTTGGTTTATTGATTACTATCAGGATGTGAAGAGAGTTTCAACCAGTATAACAAAAAGTGTTTATGAACAACATTGCCTATGTATTTAAGTATCTCAACCAGCAAGAGAGATAAAATCTACACTCTTAGAAAGGATGTGTTAAAACTGACTCAAACTGTGTTAAATTCTTACACATCAATGGGTGAGTTTTTTGTGTTGATTTCTACACAGTCACTGTGTTAAGGATTTTAACACAGTAAATGTGTCTGAAAGGTTAACACAAAGATGTGTAAACATGTGCAAAAGATGTGTAACATTGTGTTATCCTTGGCTTTACACATTGTGTTAAAAATGTATCTAAAATCCTAAACAAAATGTTAGCATTTGAAAAAATGAATGTAAAGTCATTGGTTGTCTTTCTTATTGTCAATTTATTACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000319_05828294_05834113.mRNA True 3032 mRNA 0.39 11 5828007 5835085

Neighbor

gene id symbol gene type direction distance location
CI01000319_05816948_05819499 PSMB8F coding upstream 8508 5816825 ~ 5819499 (+)
CI01000319_05812788_05816097 NA coding upstream 11836 5812693 ~ 5816171 (+)
CI01000319_05796587_05803719 ABCB3L2 coding upstream 23857 5793688 ~ 5804150 (+)
CI01000319_05742834_05745945 NA coding upstream 81866 5741331 ~ 5746141 (+)
CI01000319_05718732_05734284 NA coding upstream 93164 5718332 ~ 5734843 (+)
CI01000319_05872448_05880610 BRD2A, BRD2 coding downstream 36865 5871950 ~ 5880610 (+)
CI01000319_05882023_05885700 NA coding downstream 46938 5882023 ~ 5885805 (+)
CI01000319_05887712_05890105 HSD17B8 coding downstream 52433 5887518 ~ 5890794 (+)
CI01000319_05974099_05976045 CCDC127B coding downstream 139014 5974099 ~ 5976055 (+)
CI01000319_05978795_05979500 NA coding downstream 143110 5978195 ~ 5979549 (+)
G452748 NA non-coding upstream 75048 5751718 ~ 5752959 (+)
G452821 NA non-coding upstream 77550 5749840 ~ 5750457 (+)
G452820 NA non-coding upstream 88533 5739093 ~ 5739474 (+)
G452735 NA non-coding upstream 95071 5712686 ~ 5712732 (+)
G452825 NA non-coding downstream 19870 5854955 ~ 5855198 (+)
G452826 NA non-coding downstream 21320 5856405 ~ 5856609 (+)
G452798 NA non-coding downstream 112456 5947541 ~ 5951211 (+)
G452784 NA non-coding downstream 131805 5966890 ~ 5967329 (+)
G452856 NA non-coding downstream 150623 5985708 ~ 5986065 (+)
G452543 NA other upstream 456523 5359700 ~ 5371484 (+)
G452545 NA other upstream 471972 5353694 ~ 5356035 (+)
G452541 NA other upstream 481013 5336085 ~ 5353023 (+)
CI01000319_04787066_04788609 EIF1B, EIF1, GM6900 other upstream 1037478 4787040 ~ 4790529 (+)
G452884 NA other downstream 287559 6122644 ~ 6124939 (+)

Expression


Co-expression Network