G452748


Basic Information

Item Value
gene id G452748
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000319
NCBI id null
chromosome length 6428943
location 5751718 ~ 5752959 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU519821
ATTTTGCGCAGTTTGGATGGTTCATATGAAACTGGATTGTGTTGAGGAGACTAGATGGTGATTTTTTTCCCATTTGTTGTCGGAAAAGAAACACACTGAAAATGCTTATTACTTGGTTCTTCCTGTGCCTTGGTGTGTGGGGAGCAAGTGCAGGCACCCACTCATTCAAAGCCTTTTACACAGCAACAACAGGCATCACCAACTACCCTGAATTTATAGCTATGGGTGTAGTTGATGGCGTGTTGATAACTCATTATGACAGCGTAATCAAGCAGGTCGTTCCCCGCACAGAATGGATAAAGAATTCAGAGGGTCCAGACTACTGGAAACAACAGACTGAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU519821 True 341 lncRNA 0.44 2 5751718 5752959

Neighbor

gene id symbol gene type direction distance location
CI01000319_05742834_05745945 NA coding upstream 5577 5741331 ~ 5746141 (+)
CI01000319_05718732_05734284 NA coding upstream 16875 5718332 ~ 5734843 (+)
CI01000319_05704764_05712826 NA coding upstream 38627 5704083 ~ 5713885 (+)
CI01000319_05684798_05685353 NA coding upstream 66365 5684416 ~ 5685353 (+)
CI01000319_05651284_05669061 KIFC1, ZBTB22B coding upstream 80258 5651114 ~ 5671460 (+)
CI01000319_05796587_05803719 ABCB3L2 coding downstream 40729 5793688 ~ 5804150 (+)
CI01000319_05812788_05816097 NA coding downstream 59734 5812693 ~ 5816171 (+)
CI01000319_05816948_05819499 PSMB8F coding downstream 63866 5816825 ~ 5819499 (+)
CI01000319_05828294_05834113 NA coding downstream 75048 5828007 ~ 5835085 (+)
CI01000319_05872448_05880610 BRD2A, BRD2 coding downstream 118991 5871950 ~ 5880610 (+)
G452821 NA non-coding upstream 1261 5749840 ~ 5750457 (+)
G452820 NA non-coding upstream 12244 5739093 ~ 5739474 (+)
G452735 NA non-coding upstream 18782 5712686 ~ 5712732 (+)
G452769 NA non-coding upstream 73693 5675428 ~ 5678025 (+)
G452705 NA non-coding upstream 96780 5593404 ~ 5654938 (+)
G452825 NA non-coding downstream 101996 5854955 ~ 5855198 (+)
G452826 NA non-coding downstream 103446 5856405 ~ 5856609 (+)
G452798 NA non-coding downstream 194582 5947541 ~ 5951211 (+)
G452784 NA non-coding downstream 213931 5966890 ~ 5967329 (+)
G452856 NA non-coding downstream 232749 5985708 ~ 5986065 (+)
G452543 NA other upstream 380234 5359700 ~ 5371484 (+)
G452545 NA other upstream 395683 5353694 ~ 5356035 (+)
G452541 NA other upstream 404724 5336085 ~ 5353023 (+)
CI01000319_04787066_04788609 EIF1B, EIF1, GM6900 other upstream 961189 4787040 ~ 4790529 (+)
G452884 NA other downstream 369685 6122644 ~ 6124939 (+)

Expression


Co-expression Network