CI01000339_01327907_01343305 (GLRA3, GLRA4A, GLRA4B, GLRA4)


Basic Information

Item Value
gene id CI01000339_01327907_01343305
gene name GLRA3, GLRA4A, GLRA4B, GLRA4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 1327717 ~ 1344940 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000339_01327907_01343305.mRNA
AGACTGATTCAATTCCGCCAACTCCTTGGTAAAAGAACTGGCTCATAAGAATAATTTGTGAATTAGGCAACATTGGTTGCGTTGTTTGTTCTTTTGCAAAGTAATTTGTATTTTTAGTGCGACTGAGTTCTGTAGAAGCACCAGGAAGCATAGACAAAATCTAAGCTCCACAAAAACAAGATCAGATATTTCTGAGATAAACTTCCTCAGGACTGTAATATTCTCTAAAGCATATGAACAGGCTGGATGTCGCTGACCCGTACATACATAGGCCTACACACACACACACACACAAGTTTCTGCTTCCACGCCAGTTAATCTGGAGTCAGTCAGCAATTCTCAGTTCAGAATGCCTGAGTACCTTTAACCTCTGTGGAGACGGACAAATTTAAGAGCATGTGGTGCTTAAAATTTTATGATTCAGTGGTTAATAACTCTGTTTTCAGGTATGTTAATGATTAGAAATCTGGTGTGTGTGTATTTGGAGGGTCTTGGATAATTATGTTGGCTGAGACTGAGAGCAGAAGTGTGTGTGCGTAGTGTAGTTTAGGCAGGTGCTCTAATTCCTCCTGAGGTCAAGGAAATGTTTTAACACATCATGGACATGACCGCTGAGTGTGTGTGATTTCAGAGAAAAACTGGGTCTGTTATTCTTTAGTTTGGTTCACTCTAGAGTGAAGACACATTAAAATTAACACTGGCCTAGTTATCCACTGTGACTCAACACATAGAGCTCACTCGGATTTCTCTTTGTTTCAGTTGTTTTTCTTACACCCACTCTAATTCTTGTCTTATTTTTCTCTTTTATTCAATGTCATTATCCTATAGAGCTGCCGGTTCATGTACAGCAGTAAAGACACTTACAGCATTATAAAAGATTTCTATTTTAAATACATGCTGCATTTAAAGGTATTTTTTTTAATAATGTATTTTGTTAAACTTTTGAACAGGAAATATGAAACGTAATATACACAATATTACGTTTCATATTTACTACGAGAAGATACTTACAGTATTTGTAACTTCAAAAATTAATTTGTCACACTACATGACTATTGAAGTGCCAGGTGATTAAAAATGGTGGGAAATTCAAAATAAATGGTGACCAGTCACAGAACCTACAATCTAAAATGTCTCTAATACATATAATTTGAACCTAAATTCTTACTGTTAAGTAACAGGAAGCCCATGTTATGTGTCATCTACCCAATATAGTCAAGAATGCAGATATCGGAATAGATATGGATGGATGTTTGTCCTCTGCTGCAGTGCGTCTTGGGATGTAGATCTGGAGCCCCTCAGGTGGAGACGTGTCACAGTTGTTTATTCTGATAAAAGTCTTTAAACGCATCTTACGCCCTGTTGCCTTCTCTCTTCTCTATGGAAGATCTGCTCCTCAGGCTAACATGTGGCCAGAGAGAGAAAGAAAGCGCATAAGACCCCCTGTATACACACACACACACACACACATCTCTTAGTGTGCCCGTCTCGGGATGCGGTGCTCAGTCAGATGGCAGTGGAGGAGAGACCAGAGTGCATCAGAATGGGCGTTCTGCCCCTCCAAAACACATCTGCTTATTGAGATTTCGCCACAGGACACCAGAGAGGAAAAGAGAGCAGCTGAATAGTGAAAGGATGTTTTCTCTGTTCTGGAGGATCCTGCTGGAGCTCTTACTGGTTTGGTGGATGTTTGAAGGGGTCATCAGGTGTGTGTTTAGTAAGGAGCTAAAATCTCCCAGCAGTAGGGTGAAGCCCATGTCACCGTCTGATTTTCTGGATAAACTAATGGGAAAAACATCTGGATATGATGCTCGGATCAGGCCCAATTTTAAAGGTCCTCCTGTAAATGTCACCTGCAACATTTTTATCAACAGTTTTGGTTCCATTACAGAGACCACCATGGATTATCGGCTGAACGTTTTTCTACGGCAGCAGTGGAATGATCCACGGCTGGCTTATAAAGAGTATCCAGACGATTCCCTGGATCTGGATCCATCCATGCTGGACTCCATCTGGAAGCCAGACTTGTTCTTTGCCAATGAGAAAGGCGCCAACTTTCATGAGGTCACCACGGACAACAAGCTGCTGAGGATTTTCCAGAATGGAAATGTTCTGTATAGCATCAGACTCACTCTAATTCTGTCGTGTCCTATGGATCTGAAGAATTTTCCAATGGACATACAGACTTGTACTATGCAGTTAGAGAGCTTTGGCTACACTATGAATGATCTGATATTTCAGTGGTTGGATGAAGGCCCAGTACAAGTGGCTGACGACCTTATGCTGCCCCAGTTTGTCTTGAAAGAGGAGAAAGACCTGGGATACTGTACAAAACACTACAACACTGGTAAGTTCACCTGTATAGAGGTAAAGTTTCATCTGGAGAGGCAGATGGGTTATTACCTGATCCAGATGTACATTCCCAGCCTCTTAACTGTTATCCTGTCATGGGTCTCCTTCTGGATCAACATGGATGCTGCCCCAGCTCGGGTTGGGCTGGGCATCACTACAGTTCTCACCATGACAACACAGAGCTCTGGATCCAGAGCATCACTGCCTAAGGTGTCCTATGTGAAGGCCATTGACATCTGGATGGCTGTGTGCTTGCTGTTTGTCTTTGCTGCTTTGCTGGAGTATGCAGCAGTTAACTTTGTCTCTCGGCAACACAAAGAATTCTTCAGACTGCGGAGAAAACTACGGGAGGAACAACGCTACAGAGCTGTGAGTGGCAGTCAGAAACTCTCCTTTGTCGTACACACGCGACATGCTTTGAGTGCCCTTAAGATACTGTACAGCCACTGTGTCCCTTTGATCTTTCATGAGAGCAGCCTGCTGGCCCCCTCCAGAGCAGAGAGGGAAGTGACAATGGCTATAAAGGCTTCTGGTCAGGCTGGAGGAGCAGAGATGAAGAACAAAAGCAACAACGTAACAGGGAGCACACCAAGTAAAAGTGCACAACGCCAGTGCAGTGCCTGTGCACGGGAAGAGCAGTTAGCCTCACAGAATCAAGACCTGTACTTCATGGGATACGAGATGGACACCTGTCTGTCTGGGGACGGGCCTCTCTCTGAGGCTGCTGCTATGTTTGCGGGCCTGCCGCCTGGCCACATTCTGTTTGACATCCGCCGGCGCTTCGTGGAACGAGCTAAACGGATTGACACCATCTCACGAGCTGTCTTCCCACTCAGCTTCCTTGTTTTCAATGTATTCTACTGGTTCACATATAAAGTGCTTAGAAATGAGGACATTCACCCTGCCCTGCAACCCTGACTGCCTTTACGACTTCTGAACTTCCCAGTGTCCCATTTTGTGAGCCAGTTAAAATCCAGTGTGAGGATGAGATCCTGTATCAAAGACACTGAAAATCAAACTGGTCTAGGAAAAGGTGCAACACGTTCTCTCTGCATGAGTGAGCATATATGCATGTGTCTAAGACCACTTTTACCAAAAGCTAAATAAA

Function

symbol description
glra3 Enables extracellularly glycine-gated ion channel activity. Predicted to act upstream of or within chloride transport and ion transmembrane transport. Predicted to be located in cell projection and postsynaptic membrane. Predicted to be integral component of plasma membrane. Predicted to be part of chloride channel complex. Is expressed in hindbrain and spinal cord. Orthologous to human GLRA3 (glycine receptor alpha 3).
glra4b Enables extracellularly glycine-gated ion channel activity. Predicted to be involved in several processes, including chloride transmembrane transport; glycinergic synaptic transmission; and neuropeptide signaling pathway. Predicted to act upstream of or within chloride transport. Predicted to be located in cell projection and postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of chloride channel complex. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Is expressed in brain; hindbrain; retinal ganglion cell layer; retinal inner nuclear layer; and spinal cord. Orthologous to human GLRA4 (glycine receptor alpha 4 (pseudogene)).
glra4a Enables extracellularly glycine-gated chloride channel activity. Acts upstream of or within several processes, including chloride transport; startle response; and thigmotaxis. Predicted to be located in cell projection and postsynaptic membrane. Predicted to be integral component of membrane. Predicted to be part of chloride channel complex. Predicted to be active in neuron projection and synapse. Predicted to be integral component of plasma membrane. Is expressed in eye; hindbrain; myotome; spinal cord; and telencephalon. Orthologous to human GLRA4 (glycine receptor alpha 4 (pseudogene)).
glra4 Predicted to enable extracellularly glycine-gated chloride channel activity. Predicted to be involved in chloride transmembrane transport and response to amino acid. Predicted to be located in glycinergic synapse. Predicted to be integral component of plasma membrane. Predicted to be integral component of postsynaptic specialization membrane.

NR:

description
Glra4b protein, partial

GO:

id name namespace
GO:0043200 response to amino acid biological_process

KEGG:

id description
K05271 GLRA4; glycine receptor alpha-4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000339_01327907_01343305.mRNA True 3460 mRNA 0.44 11 1327717 1344940

Neighbor

gene id symbol gene type direction distance location
CI01000339_01287752_01312897 NA coding downstream 14820 1286922 ~ 1312897 (-)
CI01000339_01242435_01246985 NA coding downstream 80732 1241131 ~ 1246985 (-)
CI01000339_01172551_01191348 SPOCK3 coding downstream 136369 1171336 ~ 1191348 (-)
CI01000339_01082705_01091230 LAS1L coding downstream 236487 1082643 ~ 1091230 (-)
CI01000339_01061363_01065408 ZC4H2.L, ZC4H2, HC127 coding downstream 261621 1060274 ~ 1066096 (-)
CI01000339_01346138_01360618 AIFM1 coding upstream 802 1345742 ~ 1360618 (-)
CI01000339_01373395_01377800 NA coding upstream 28455 1373395 ~ 1377800 (-)
CI01000339_01385481_01386022 NA coding upstream 40091 1384306 ~ 1386094 (-)
CI01000339_01394345_01398989 NA coding upstream 49302 1394242 ~ 1398989 (-)
CI01000339_01515719_01522951 APOOL coding upstream 170476 1515416 ~ 1522951 (-)
G481557 NA non-coding downstream 810 1322367 ~ 1326907 (-)
G481576 NA non-coding downstream 9831 1317607 ~ 1317886 (-)
G481163 NA non-coding downstream 187675 1138563 ~ 1140042 (-)
G481272 NA non-coding downstream 269393 1056645 ~ 1058324 (-)
G481266 NA non-coding downstream 365229 961751 ~ 962488 (-)
G481588 NA non-coding upstream 22007 1366947 ~ 1367223 (-)
G481589 NA non-coding upstream 23426 1368366 ~ 1368577 (-)
G481593 NA non-coding upstream 37572 1382512 ~ 1382734 (-)
G481597 NA non-coding upstream 69019 1413959 ~ 1414312 (-)
G481157 NA other downstream 211569 1114129 ~ 1116148 (-)
CI01000339_00932339_00951205 SMARCA1 other downstream 374283 931680 ~ 951205 (-)
G480969 NA other downstream 1237520 85093 ~ 90197 (-)
G481610 NA other upstream 226597 1571537 ~ 1573962 (-)
G481662 NA other upstream 378830 1723770 ~ 1733019 (-)
CI01000339_01988812_02024891 NA other upstream 644235 1988537 ~ 2025183 (-)
G483104 NA other upstream 2049168 3394108 ~ 3401228 (-)
G483199 NA other upstream 2432951 3777891 ~ 3778551 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_031002 glra4b coding NC_007116.7 CM002889.2 22515347 ~ 22544151 (-)
bowfin (Amia calva) AMCG00014207 LOC108443135,LOC102799111 coding CM030128.1 CM030128.1 4460775 ~ 4498956 (+)