G480969


Basic Information

Item Value
gene id G480969
gene name NA
gene type unknown
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000339
NCBI id null
chromosome length 8057057
location 85093 ~ 90197 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU551918
TGGCGTGGAGGTGGCAGTCTTGATGGCAGGGGCAGTATTCTCTGTATTCTTGCTCATCTTGTTGTCTAGGATGTTCTTCTTGACCACTTTGAGATCGCGGTTCTTGCCTGGGATGTATCCATGTTTCAGGGATATCAGGACAGGGTCTCCATTCTTCCCTTCAAACCATTCCTCGGCCTCCAGGGGGGCTTCTGGACCTGCCGTGTCAGGGTAAAGGTCATCCTGGAACAGGTCCGATTTTCTTGGCACGGTCATGATGATAGGCTCACACTTTCTCTCATGCAGTTTGTAAAACCTTGCGATCTCACACTTGTTGACGTCCAGCCCTCTCTTGGGCATGTATCCCATGCCCCTCTGAGGCTCCTTAGTGGTAAAGGTGTTGAGGTAATGGACAAAGGGAGCTTCGTCCGTAATCTCAAAGTAACGGATGCTGCTGTCACCCTTTCCACACAGGTAGACCACATTAGTATCGGGATCATAGAAGGGCAGGAGGACTCCATTACTGGTGTCCATCTCATGGACAGAGATCGCCTCCTCCATATTTTCCGGATCCCAGAGGGCGAGCTGTCTCTCGCTCATGCGGCTAAAACCAGTGGTGAACACTTTGCCGTCAGACAAGAAAATAGCTCTCATGGGCCTGGCGCCCTCATGGGCCTTGTCCTTCTCCGCAATGATCTCCTCCTTGCGTGGGTCGATGACACGGACTTTCTTGTCCTTGCAGGCAGTGCAGATGAGACTGCCATTGCGGTTCCAGCAGGCGCTGAAGATGATGTCAGGGTGCATATCCTCCAGGGTGATCATGGACTCTCCCGTGCCCACATTCCAGATGAAAATCACATTATCACAGCCTGCACTGAGGAGGACGTTGCGGGCGGTTGGATGCCAGGTAATGATTCCCACTCTTTTAGAATGACCCTCCAGCACCACCACTGGCTCGGACATGGAGGTCACCAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU551918 True 954 TUCP 0.53 7 85093 90197

Neighbor

gene id symbol gene type direction distance location
CI01000339_00106505_00110330 ISCU, ISCUB coding upstream 16220 106417 ~ 110596 (-)
CI01000339_00138459_00141506 FICD coding upstream 48178 138375 ~ 141506 (-)
CI01000339_00199870_00204573 NA coding upstream 109442 198630 ~ 204636 (-)
CI01000339_00233236_00247333 WSCD2 coding upstream 142969 233166 ~ 247633 (-)
CI01000339_00269232_00284617 NA coding upstream 179030 269227 ~ 284868 (-)
G480981 NA non-coding downstream 15649 43865 ~ 69444 (-)
G480982 NA non-coding downstream 42617 42149 ~ 42476 (-)
G480983 NA non-coding downstream 43358 40954 ~ 41735 (-)
G480977 NA non-coding downstream 48172 36410 ~ 36921 (-)
G481075 NA non-coding upstream 69275 159472 ~ 159794 (-)
G481102 NA non-coding upstream 240051 330248 ~ 330747 (-)
G481032 NA non-coding upstream 295463 385660 ~ 386483 (-)
G481124 NA non-coding upstream 384330 474527 ~ 475730 (-)
CI01000339_00932339_00951205 SMARCA1 other upstream 858620 931680 ~ 951205 (-)
G481157 NA other upstream 1023932 1114129 ~ 1116148 (-)
G481610 NA other upstream 1481340 1571537 ~ 1573962 (-)
G481662 NA other upstream 1633573 1723770 ~ 1733019 (-)
CI01000339_01988812_02024891 NA other upstream 1898978 1988537 ~ 2025183 (-)

Expression


Co-expression Network