XLOC_000135


Basic Information

Item Value
gene id XLOC_000135
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 10462044 ~ 10462882 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00003034
aacagtttttgacagttttcttttttattatccaGTCATCTACGCCTCGTCAAACACTTATCAAAAGCCTCAAGAAATGTGTTGGTGCTGAAAATCAAGACCTGTACATTTCTTAAACAGTTCAATCCCAGGTCAATAATTTCATACACATTCCAAAAAACACTAATCAAAATAGGCATTCAAATACCTGCAAGTCCTGCAGAGCATCTCTCCCTCTTTCAcatatgcacatgcacacacacaagcagacacacacacacaaatagcttTTGGAAATAACCACGCCTGATATCAGATCAACAGTTTAAGTTAACAATTCTGTCAAGAAAAGAAGAATTCAAGAAAAACACAACTCAAGCATTCCCTAAAGTGACAtcacatacataaacacagcaTAAACGcaaaacaaatatgaacatatCAAGAAAATATGGTACCATATATGGATAAAAAAAGACAACTTAACTTAATGTAGAACCAAAACTATTGTTTAGTAAAGATGTAAAAATGAGAACACT

Function

GO:

id name namespace
GO:0044444 obsolete cytoplasmic part cellular_component
GO:0005968 Rab-protein geranylgeranyltransferase complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004663 Rab geranylgeranyltransferase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00003034 True 518 lncRNA 0.34 2 10462044 10462882

Neighbor

gene id symbol gene type direction distance location
XLOC_000133 AL935188.1 coding upstream 98193 10363720 ~ 10363851 (+)
XLOC_000132 pip4p1b coding upstream 137019 10318077 ~ 10325025 (+)
XLOC_000131 zgc:77880 coding upstream 146838 10305611 ~ 10315206 (+)
XLOC_000130 eif3f coding upstream 158000 10297027 ~ 10304044 (+)
XLOC_000129 npy2rl coding upstream 226707 10221568 ~ 10235337 (+)
XLOC_000136 NA coding downstream 154642 10617524 ~ 10617930 (+)
XLOC_000137 NA coding downstream 182382 10645264 ~ 10668028 (+)
XLOC_000138 NA coding downstream 182482 10645364 ~ 10680841 (+)
XLOC_000139 AL953910.1 coding downstream 199430 10662312 ~ 10663525 (+)
XLOC_000140 MPC2 coding downstream 220961 10683843 ~ 10696603 (+)
XLOC_000121 NA non-coding upstream 510171 9946664 ~ 9951873 (+)
XLOC_000120 NA non-coding upstream 547414 9886955 ~ 9914630 (+)
XLOC_000116 BX323038.1 non-coding upstream 1176693 9277846 ~ 9285351 (+)
XLOC_000111 NA non-coding upstream 1329554 9129386 ~ 9132490 (+)
XLOC_000143 NA non-coding downstream 318046 10780928 ~ 10787317 (+)

Expression


Co-expression Network