CI01000340_08710260_08719614 (UBE3A)


Basic Information

Item Value
gene id CI01000340_08710260_08719614
gene name UBE3A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 8710260 ~ 8720007 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000340_08710260_08719614.mRNA
GATTGCTACCTGACCACCTTTTGGTCTCTTTGAGTTCAGAGCTGAAGAAGAGTGTGATATTGGAAACTTTAAGCAAGTCTAATAATTTAAGGTATAATCCTCGCTTTTTACATAATTTTGAGAGTAGGCCAATTATGTGCACATGCAACAGTCATGTTTTGATGGCTGTTGAAAAATTCAAATGGAAGCGAGCGGCTGCAAAGCATTTAATTGAGCGCTACTACCACCAGTTAACAGAGGGCTGTGGAAATGAGGCCTGCACGAATGAGGCTTGTGGCTCTTCTCCGGGTTTCCAGCGCATGGATAACAATGCAGCGGCCATCAAGGCCCTGGAGTTATATAAGAATAATGCCAAACTGTGTGATCCTCACCCCTCTAAGAAAGGAGCCAGTTCAGCCTTCCCGGAGAACAGTGCCAAAGGAGCTCACAACTTCTCTGCTTGCAGCAACGGGAAGATGAACCATAAGGACCTACAACCCACGAGGGAGGACTTTAGAGATCTGAATTTCTTGACGGAGGAGAAGGTGTATGAAATCCTGGGCCTCTGCAGTGAGACTGAGGACTATTCTCCTCTAATCCGTGTCATCGGTAGGGTTTTCTCAAGTGCGGAGAGTCTGGTCCAGAGTTTCCGCAAGGCGAAGCAACATACCAAGGAAGAGCTCAAGTCCCTTCAGGCCAAGGATGAGGACAAAGATGAAGATGAAAAAGAAACGGCCTCTGGTTCGTCCACGGCGATGGAGGTGGAACCCGAAGCCTCAGCGTCAAGTGGAGACGGGCCGTCTCACGGGGAGAACAACGTCCAAAAGTTTGATCCTGTAGAAGTTTCTGTAGACATTGAGGCAGTTAGAAGAGTGTACGACAGACTATTATCAAACGAGAAGATTGAAGCAGCATTCCTCAACGCGTTAGTCTACCTGTCGCCCAACGTAGAGTGTGACCTCACCTATCACAACGTGTACGCCGCCGACCCTAATTACCTGAACGTCTTCATTATCGTCATGGAGAACAGTAATCTCCACAGTCCGGAATACTTAGAAATTGCACTGCCGCAATTCTGCAAGGCAATGAGCAAGCTACCTCTTCCGGCTCTGGCCAAGCTTGCATGGTTGTGGTCGCAGTACGGCGCAGACCAGATCCGACGTCTGGTCGAGACTTTCCAGCAGCTTATTACCTACACGGTTATCAGCAACGAGTTCAGCAGTGAAAACCTGGTCAACGAGGATGATGGAGTGGTGGCAGCCACCAAGTGCTTGAAAATCGTCTACTATGCAAACGTGTTGGGCGGCGACCTAGACACGGGTCACAACGAGGAGGAGGATGACGAACCGATCCCGGAGTCGAGTGAGTTGACTCTGCAGGAGCTGCTAGGCGAGGAGCGACGCAATAAGAAAGGCCCTCGAGTGGATCCGCTTGAGACGGAATTGGGCATCCGTGCCTCGGACTGTCGAAAACCCCTCATCCCCTTCGAGGAGTTCATCAATGAACCGCTCAATGAGGTGCTGGAAATGGACAAAGACTACACTTTCTTCAAGGTGGAGACAGAGAGCAAGTTCTCCTTTATGACCTGCCCGTTCATTCTTAACCCTGTGACTAAGAATCTTGGCCTGTACTATGACAACCGGATCCGCATGTACAGCGAGCGCAGAATTACTGCCCTCTACAGTTTGGTGCAGGGACAACAGCTGAACCCCTATCTGCGACTCAAAGTGCGCAGAGACCACATCATTGATGATGCTCTTGTCAGGTTGGAGATGATTGCCATGGAAAACCCAGCAGACCTGAAGAAACAGCTGTATGTGGAGTTTGAGGGTGAGCAAGGAGTGGATGAAGGAGGAGTATCCAAAGAGTTCTTTCAGCTGGTCGTAGAGGAGATCTTTAACCCAGATATAGGCATGTTTACCTATGATGAAAGCACAAAGCTATTCTGGTTTAACCCTTCATCGTTTGAAAATGAAGGCCAGTTCACCTTGATAGGCATCGTCCTGGGCCTAGCTATCTACAATAATTGCATTCTCGATGTGCACTTCCCTATGGTGGTTTACAGAAAACTAATGGGAAAGAAAGGAACGTTTCGAGACCTGGCAGACTCTCATCCGGTTCTTTATCAGAGTCTGAAGGACCTACAGGAATATGAAGGTAATGTGGAAGAAGACATGATGATTACCTTCCAGATCTCACAAACAGACCTGTTTGGAAACCCACTAATGTATGATTTAAAGGAAGGTGGTGATAAAATCCCAGTTACCAATGAGAACAGAAAGGATTTTGTGGCACTCTATGCAGAGTACATGCTAAACAAAAGTGTGGAGAAACAGTTCAAGGCCTTCAGAAGAGGATTCCACATGGTCACTAATGAGTCTCCACTGAAGTATCTGTTTCGACCAGAGGAAATTGAGCTGCTTATATGTGGCAGCAGGAATCTTGACTTCCAAGCACTTGAAGAGAGTACAGAATATGATGGAGGATACAACAAAGACTCTCGCATTATTAAGGATTTCTGGGAGACTGTGCACTCATTTGGGCAGGAGCAGAAGAGGCTATTTCTTCAGTTCACCACTGGCACAGATAGAGCTCCAGTTGGAGGTTTAGGCAAACTCAAGATGATTATTGCCAAAAATGGCCCTGACTCTGACAGGTTACCCACCTCTCATACTTGCTTCAACGTGCTGCTCCTCCCCGAATACTCCACCAAGGAGAAACTTAGAGAGAGACTCCTTAAAGCCATCACTTACGCCAAAGGCTTCGGCATGCTCTGAGGCTCCAGGATCCACAAAAGAACTCACTCGCCCTCAGAGGTTTCATTTGTGCGTCACAGGAGAATTCAGCTACATCGACAACTAAAAGTAAATATCAAGTTTAAATGTAAGGCAACGTGAAATGGGTTAAAATCGGAAAGTTCTGGTGGCCGTGTGCCTGTGCCTAAATAGTAGATAAAACCACACTGGACTCTTGGCTCTCTCTCCCTCTTATGTAAGTGTTAAGGTTCCCTTTTTGTATGCACTGAGATATAGCGTTATTTATTTTAAGGGATAAAATCTCTTCTGTCATGTCTGCCAGGAAATCCACTCACTTTTTGCTTTTGTAGTCATAAAAAGGAGGGACGGTTAGAAGTTTTTAACACCTGCAGGACTGATCACCATCTAAACTTA

Function

symbol description
ube3a Predicted to enable ligase activity and ubiquitin protein ligase activity. Predicted to be involved in protein K48-linked ubiquitination. Predicted to act upstream of or within ubiquitin-dependent protein catabolic process. Predicted to be located in cytosol and nucleus. Predicted to be part of proteasome complex. Human ortholog(s) of this gene implicated in Angelman syndrome. Orthologous to human UBE3A (ubiquitin protein ligase E3A).

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K10587 UBE3A, E6AP; ubiquitin-protein ligase E3 A

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000340_08710260_08719614.mRNA True 3149 mRNA 0.47 11 8710260 8720007

Neighbor

gene id symbol gene type direction distance location
CI01000340_08632493_08682360 ATP10A coding upstream 27855 8632373 ~ 8682405 (+)
CI01000340_08547042_08577482 NA coding upstream 132342 8546899 ~ 8577918 (+)
CI01000340_08531898_08544235 GABRB3 coding upstream 164715 8531161 ~ 8545545 (+)
CI01000340_08259928_08321896 OCA2 coding upstream 388364 8259928 ~ 8321896 (+)
CI01000340_08204216_08250869 HERC2 coding upstream 458690 8204216 ~ 8251570 (+)
CI01000340_08746450_08751542 STK35L coding downstream 25312 8745319 ~ 8751598 (+)
CI01000340_08763694_08772208 BIN2B coding downstream 42465 8762472 ~ 8772797 (+)
CI01000340_08774019_08777325 SLC48A1B, SLC48A1 coding downstream 53830 8773837 ~ 8778302 (+)
CI01000340_08882602_08883850 PRSS60.1, PRSS60.2 coding downstream 162595 8882602 ~ 8883850 (+)
CI01000340_08895637_08897909 PRSS60.2 coding downstream 175363 8895370 ~ 8898290 (+)
G490693 NA non-coding upstream 68785 8640547 ~ 8641475 (+)
G490575 NA non-coding upstream 350499 8359468 ~ 8359761 (+)
G490574 NA non-coding upstream 351755 8358243 ~ 8358505 (+)
G490471 NA non-coding upstream 523913 8186071 ~ 8186347 (+)
G490442 NA non-coding upstream 644739 8056185 ~ 8065521 (+)
G490720 NA non-coding downstream 72964 8792971 ~ 8793223 (+)
G490721 NA non-coding downstream 73403 8793410 ~ 8793894 (+)
G490724 NA non-coding downstream 79117 8799124 ~ 8799532 (+)
G490725 NA non-coding downstream 83076 8803083 ~ 8803416 (+)
G490641 NA non-coding downstream 83708 8803715 ~ 8806410 (+)
G489634 NA other upstream 2009472 6694221 ~ 6700788 (+)
CI01000340_04660938_04668996 NA other upstream 4045075 4659584 ~ 4669322 (+)
CI01000340_04399692_04401164 NA other upstream 4308764 4399419 ~ 4401496 (+)
G487133 NA other upstream 4727715 3973915 ~ 3982545 (+)
CI01000340_02930635_02933799 LSM2 other upstream 5778460 2930635 ~ 2933935 (+)
G490645 NA other downstream 318805 9038812 ~ 9043101 (+)
G490826 NA other downstream 405177 9125184 ~ 9131397 (+)
G490839 NA other downstream 514966 9234973 ~ 9237559 (+)
G490896 NA other downstream 1111466 9831473 ~ 9845052 (+)
G492194 NA other downstream 1931676 10651683 ~ 10652694 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00014316 ube3a,LOC101472780 coding CM030128.1 CM030128.1 9004500 ~ 9020633 (+)