Gene
RNA
| Item | Value |
|---|---|
| gene id | G488371 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000340 |
| NCBI id | null |
| chromosome length | 19571558 |
| location | 2905985 ~ 2908619 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU560329 | False | 2509 | lncRNA | 0.40 | 2 | 2905985 | 2908619 |
| TU560330 | True | 2330 | lncRNA | 0.42 | 2 | 2905985 | 2908440 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000340_02567081_02567521 | NA | coding | downstream | 338342 | 2566737 ~ 2567643 (-) |
| CI01000340_02341068_02348409 | NA | coding | downstream | 557508 | 2340503 ~ 2348477 (-) |
| CI01000340_02333476_02337529 | AGXTA | coding | downstream | 568456 | 2333102 ~ 2337529 (-) |
| CI01000340_02329631_02332000 | DTYMK | coding | downstream | 573985 | 2329606 ~ 2332000 (-) |
| CI01000340_02293072_02301920 | STK25B, STK25, STK25A | coding | downstream | 603038 | 2293014 ~ 2302947 (-) |
| CI01000340_02936853_02939837 | BCL6A, BCL6 | coding | upstream | 27018 | 2935637 ~ 2939837 (-) |
| CI01000340_03342324_03363204 | TOMM70, TOMM70A | coding | upstream | 433682 | 3342301 ~ 3363619 (-) |
| CI01000340_03379959_03401892 | GFI1AB, GFI1 | coding | upstream | 470667 | 3379286 ~ 3401952 (-) |
| CI01000340_03403238_03403692 | NA | coding | upstream | 494604 | 3403223 ~ 3403692 (-) |
| CI01000340_03406706_03449487 | EVI5 | coding | upstream | 497855 | 3406474 ~ 3449487 (-) |
| G488359 | NA | non-coding | downstream | 47742 | 2855259 ~ 2858243 (-) |
| G488346 | NA | non-coding | downstream | 72780 | 2832983 ~ 2833205 (-) |
| G488325 | NA | non-coding | downstream | 99743 | 2806013 ~ 2806242 (-) |
| G488304 | NA | non-coding | downstream | 119894 | 2785667 ~ 2786091 (-) |
| G488302 | NA | non-coding | downstream | 122246 | 2781513 ~ 2783739 (-) |
| G488334 | NA | non-coding | upstream | 17135 | 2925754 ~ 2928685 (-) |
| G488378 | NA | non-coding | upstream | 25723 | 2934342 ~ 2934655 (-) |
| G488341 | NA | non-coding | upstream | 34602 | 2943221 ~ 2945567 (-) |
| G488384 | NA | non-coding | upstream | 55679 | 2964298 ~ 2964585 (-) |
| G488387 | NA | non-coding | upstream | 68472 | 2977091 ~ 2977767 (-) |
| G487884 | NA | other | downstream | 1003713 | 1895801 ~ 1902272 (-) |
| CI01000340_00787534_00791061 | NA | other | downstream | 2114576 | 786551 ~ 791409 (-) |
| G485786 | NA | other | downstream | 2580269 | 325334 ~ 325716 (-) |
| CI01000340_00062787_00080635 | NA | other | downstream | 2823890 | 62780 ~ 82095 (-) |
| G488782 | NA | other | upstream | 1097186 | 4005805 ~ 4006448 (-) |
| G488862 | NA | other | upstream | 1598577 | 4507196 ~ 4518120 (-) |
| CI01000340_04598932_04627160 | NA | other | upstream | 1691601 | 4598714 ~ 4627447 (-) |
| CI01000340_05321995_05329778 | ATG4C | other | upstream | 2412134 | 5320753 ~ 5330215 (-) |
| CI01000340_06095704_06194498 | MAST2 | other | upstream | 3274671 | 6095704 ~ 6194501 (-) |
