G490442


Basic Information

Item Value
gene id G490442
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 8056185 ~ 8065521 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU562601
CACAAATGTTGCACTTGTCGCAAAAGACCATGTCATTCCCTTCCTCACTGTCAGGTGAGCGACATACATCACAGATGACGTCCTCATCGTACTCTATTCCCAACCCTTCCTCCGTCTCGATGGCGTGGTTCATGTTGTCATGGCACTGCCTCTCCAGTGCCTCCATCACCCGCTCCATCGTCAGCTCATCCACCGGCCCGTCACCCATCGTCCCAAGCTCTGCATTAAGCTGCTGGAGCCAGTATAGATCCATATCATCTAGGTCATATCTGCACATAGCCTCCGCCAGCTCCTTGATATTGACATAACCAGTCTCCGTAGAGTCCTGACTCCAGCACTGAATATATTTCCTCGGTTTTGTGAAGAGGACCTCCTTTGGCTTCTCTGCTATTATCCTCACGGAGGGCTGAGGGATAGTGTCTGGACTGGCGAGTACTTGGACTCCTTTTTCCCATTCCTGCTTCCATGTGTCCGCCAACAGGTAATAATCCTCTGGAGAAATATGGTGAGAGTCCGGCAGCTTCATGGCACTGATCAAGTCTTTTCTGAACACCTCTGCTGGTTTCTTCTGAGCAGAGGCGGGGGTGCCCGGTTTGCTTCCATACTTGTTAGAGGAAAAGGACGTCGAGGGACTCTCATTGTCTGAACTGTCACTGCTGCTTGAAGTCCTGAGTCGTTTCATCCTGACGTATCCATAAATTCAAAGAGCATGCTACTGTTTTCCTCTGCTGTGCTTCTGCCTCTCGCTCATGCCTCACATCCAAAAATCCAGTGTTTCGGGACGATCGCACACGGCGATAGACTCCGCAAGGCTGTATTCAAGTCAGCAATCCAGAAGTGCGGCAAATACTCGTTTTTTTCCTTTATTTTTTCTTTCTTGTCCCACTGTCAATATCCCAAAAGCAGAAATCACCCTCTCACCACGGCACAACAGCTCTATTGTACTACCCGAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU562601 True 954 lncRNA 0.50 7 8056185 8065521

Neighbor

gene id symbol gene type direction distance location
CI01000340_08024828_08028479 GTPBP6 coding upstream 27577 8024828 ~ 8028608 (+)
CI01000340_08017397_08018781 NA coding upstream 37181 8017350 ~ 8019004 (+)
CI01000340_07954531_07957240 NA coding upstream 98877 7954531 ~ 7957308 (+)
CI01000340_07948302_07952600 NA coding upstream 103479 7947428 ~ 7952706 (+)
CI01000340_07929169_07934135 NA coding upstream 121766 7928482 ~ 7934419 (+)
CI01000340_08076352_08117930 SLC9A7 coding downstream 10831 8076352 ~ 8119164 (+)
CI01000340_08127948_08139978 TUBGCP5 coding downstream 62427 8127948 ~ 8141062 (+)
CI01000340_08150345_08170718 CYFIP1 coding downstream 84824 8150345 ~ 8170846 (+)
CI01000340_08175512_08182712 CYFIP1 coding downstream 109730 8175251 ~ 8183269 (+)
CI01000340_08204216_08250869 HERC2 coding downstream 138695 8204216 ~ 8251570 (+)
G490503 NA non-coding upstream 3084 8052086 ~ 8053101 (+)
G490437 NA non-coding upstream 4223 8049887 ~ 8051962 (+)
G490502 NA non-coding upstream 7191 8048615 ~ 8048994 (+)
G490465 NA non-coding upstream 94042 7959672 ~ 7962143 (+)
CI01000340_07920331_07924545 NA non-coding upstream 132395 7920331 ~ 7924545 (+)
G490471 NA non-coding downstream 120550 8186071 ~ 8186347 (+)
G490574 NA non-coding downstream 292722 8358243 ~ 8358505 (+)
G490575 NA non-coding downstream 293947 8359468 ~ 8359761 (+)
G490693 NA non-coding downstream 575026 8640547 ~ 8641475 (+)
G490720 NA non-coding downstream 727450 8792971 ~ 8793223 (+)
G489634 NA other upstream 1355397 6694221 ~ 6700788 (+)
CI01000340_04660938_04668996 NA other upstream 3391000 4659584 ~ 4669322 (+)
CI01000340_04399692_04401164 NA other upstream 3654689 4399419 ~ 4401496 (+)
G487133 NA other upstream 4073640 3973915 ~ 3982545 (+)
CI01000340_02930635_02933799 LSM2 other upstream 5124385 2930635 ~ 2933935 (+)
G490645 NA other downstream 973291 9038812 ~ 9043101 (+)
G490826 NA other downstream 1059663 9125184 ~ 9131397 (+)
G490839 NA other downstream 1169452 9234973 ~ 9237559 (+)
G490896 NA other downstream 1765952 9831473 ~ 9845052 (+)
G492194 NA other downstream 2586162 10651683 ~ 10652694 (+)

Expression


Co-expression Network