G490725


Basic Information

Item Value
gene id G490725
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 8803083 ~ 8803416 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU562909
CTGCCAAGCCGATCAATTTATTATTTGAGCTATATTAATTATTAATAGGGCACAGTCTATCCAGCGTAAAGGCCTCCTCTCTGTTGACTGCCATTCAAAAATATCTCCTGACCGTTTCAGCACGACAGCGCTGTCAGGGCCAGAGTTAATGCCACTGTTGCTTTATCTTTTTAATGTCGTGAAACTTGGACAAGTAAAATAGCTTAGCAGTTAGCATAGCCGAATATCAGCATAATCTGTCGACTGCCTCAGTGACAGTGTGTACAATGTCTCCATCTAGTGGCCATAAACACGAAATGCAAGTGAGCTAAATATTATAATATACATGAACAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU562909 True 334 lncRNA 0.40 1 8803083 8803416

Neighbor

gene id symbol gene type direction distance location
CI01000340_08774019_08777325 SLC48A1B, SLC48A1 coding upstream 24781 8773837 ~ 8778302 (+)
CI01000340_08763694_08772208 BIN2B coding upstream 30286 8762472 ~ 8772797 (+)
CI01000340_08746450_08751542 STK35L coding upstream 51485 8745319 ~ 8751598 (+)
CI01000340_08710260_08719614 UBE3A coding upstream 83076 8710260 ~ 8720007 (+)
CI01000340_08632493_08682360 ATP10A coding upstream 120678 8632373 ~ 8682405 (+)
CI01000340_08882602_08883850 PRSS60.1, PRSS60.2 coding downstream 79186 8882602 ~ 8883850 (+)
CI01000340_08895637_08897909 PRSS60.2 coding downstream 91954 8895370 ~ 8898290 (+)
CI01000340_08905333_08906557 GPR84 coding downstream 101917 8905333 ~ 8908001 (+)
CI01000340_08938200_08942073 NA coding downstream 134736 8938152 ~ 8942624 (+)
CI01000340_08970483_08982079 B4GN1, B4GALNT1B, B4GALNT1 coding downstream 167026 8970442 ~ 8983411 (+)
G490724 NA non-coding upstream 3551 8799124 ~ 8799532 (+)
G490721 NA non-coding upstream 9189 8793410 ~ 8793894 (+)
G490720 NA non-coding upstream 9860 8792971 ~ 8793223 (+)
G490693 NA non-coding upstream 161608 8640547 ~ 8641475 (+)
G490575 NA non-coding upstream 443322 8359468 ~ 8359761 (+)
G490641 NA non-coding downstream 299 8803715 ~ 8806410 (+)
G490733 NA non-coding downstream 38022 8841438 ~ 8842135 (+)
G490735 NA non-coding downstream 49114 8852530 ~ 8852749 (+)
G490736 NA non-coding downstream 49867 8853283 ~ 8853559 (+)
G490737 NA non-coding downstream 50193 8853609 ~ 8853819 (+)
G489634 NA other upstream 2102295 6694221 ~ 6700788 (+)
CI01000340_04660938_04668996 NA other upstream 4137898 4659584 ~ 4669322 (+)
CI01000340_04399692_04401164 NA other upstream 4401587 4399419 ~ 4401496 (+)
G487133 NA other upstream 4820538 3973915 ~ 3982545 (+)
CI01000340_02930635_02933799 LSM2 other upstream 5871283 2930635 ~ 2933935 (+)
G490645 NA other downstream 235396 9038812 ~ 9043101 (+)
G490826 NA other downstream 321768 9125184 ~ 9131397 (+)
G490839 NA other downstream 431557 9234973 ~ 9237559 (+)
G490896 NA other downstream 1028057 9831473 ~ 9845052 (+)
G492194 NA other downstream 1848267 10651683 ~ 10652694 (+)

Expression


Co-expression Network