CI01000364_00400175_00427556


Basic Information

Item Value
gene id CI01000364_00400175_00427556
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000364
NCBI id null
chromosome length 520240
location 399374 ~ 427576 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000364_00400175_00427556.mRNA
CTATAAAATAAAATTCAAGGAGTTTTGTCATAAGTTTCATATTCATAACTGTGACCACACTGGCTGTTCACAAGAGCGATCGAGAACTGCAAACCATACAGGCTTCTGTATGGCTCTCTTAGTGATCATTTGTGTTGATTCAATTAAAATGCACATATTACATTTTTAAATATATTACATAATTCACTGATGACCAATTGTCATGTACAATGCACCAACTAATTGTGATGCGGCACAAGCAGCCAAAATTCCATTGGAAAATGTTAAGTAAAGTGGTAAATAGAATAGAATAGTCTATAGTGAGATTAACATAGGTTTTATTTTAATAGATTTGACTCATGTCATTTTTCTTATTAGTCATTAGGGGTGTGACGAGACGGGTAGCTAACGAGACAAGACAGTTTTTCTCATCACTCCCCGATTAGTCATTGATGAATCTCTTTATAACCCCCTGACAAATGGAACAGTAATATAAAATTTCACCATAATGTGACTATTTAATCTGTGTGGAAACAAATGAAATGAACTATAATCTAAATTATTATTCAGTGCCATCACATTTAGCCTCAGAAGTTTATATATACAGTAGGCTGATGTGTATAATTTTTTTTTTTTTTTTTAACAAACTAAAGAATGAATGAATAAAGATATTTGTTTCTAGATGCTCCCCAGACTTCCATCTATCCAAAGGATGATGTACACCTGGGTGTTCAGAACACCCTCATCTGTCATGTGACCGGCTTCTATCCTCCAGCTGTCAGCATCTCATGGAATAAGAATAGTGTTAATTTGACAGAAGGCATGAGTTTAAGTCAGTACCGTCCAAAGACAGATGGTACCTTCACCGTCTTCTCCACTCTTAAGTTTACACCCATTGAAGGAGATGTTTATAGCTGCACTGTGAACCACAGAGCCCTCAATGGCAAACCTAAGACCAAAATATGGGATGATGAATATTACTTAACCCGTTGGTCAAGATGCTTCTACAGCTCCCATGATCTCAGTGACATGGTCTTTATTGACGACATTTATTTTAATAAACAACTGATTGTACAGTTCAACAGCACTGTGGGGAGTTTTGAAGGGTTTAATGAGTATGGAACAAGTGTTGCAGAGGGATGGAACAATGGCCCTTTTCTGATAACAGAGAGAACATATATTGATACAGAATGCAGATTTAATGTTAAAAAGAGGGAAAAAGCTCTTCATGATAAAGCAGTGAAACCAAAAGTTAAGCTCAGTTTAGTGAAACAGTCTGGTGGCAGTTATCCAGCTATGTTGATATGCAGCGCATATGAATTTTATCCACAACACATCAAAGTGTCCTGGCTGAGAGATGGTGAAGTAATGACCTCCGAAATGACCTCTGTTATGGAACTGGCTGATGGTGACTGGTACTACCAGGTACATTCTGAGATGGCGTACATCCCAAGATCTGGAGAAAAGATCTCTTGTATGGTGGAGCATGCCAGCTCAACGCAACCCATCATCACAAACTGGGATCCATCTCTTCCTGATTCTGAGAAGATCAAAATCGGTATTGGGTCATCTGTTCTGGTGCTGGGAGTCATTACAGCAGCTGCTGGACTTATTTACTACAAGAAATCAATGGGATCCTGGAGTTCAGCGGTGTCATGTGGACAAAATAAGGCAGGATGCTTAAAGAAAAATGCCATGACCAGCCAAATCACCCGTAAAGATGCAGAGAAGGCGGTCTCCAAGTGGCTCATTGGTGCTAGGGACCGGGGGGTAATAGACAGGCCCGACAGGCAACTCCTCAACAAGGACTTCAGGCTACAGGTTCATTTGAGGTGGAAAGTAGCTAATCCTGTCTATAACACTAGGGCCCATGTGAAGCCCAACTTCAGCCCATCTGGGCGTGCCCACATGGGGCCACCATGGAACCCCCGGACAAAATTAACTCACCAGCCCATATCCAACCCTTATGGGCCCCACATGGGTGTGTTGGCAGGAGAAATAGGTGCACAAAACATCATGTCTGCTTCTAGGATGAATAAAGCAATAGTTGTATTTCTGAAAGAAGTTGAAATGGTCAATCACTTAGTGGAGTGTGGTTTGAGAGTTCAGGATGTGTTTGTTCCAGTTTTACCTTTGTCTAATCTTTCGAAAAAAGTGATGTTGTCAAACGTACCTCCGTTTATCTCTGATAAAGCGCTCGAGTCTGTTTTAGCTCGTTATGGAAAATTGGTTGGGTCGATTAAAATGATTCCTCTGGGATTGAAAGCCCCAGAGTTGAAACATGTTATGTCATTCAGACGACAGGCTTTGATGATACTAAGTGCTGAATTCGCAACGCTTGAGGTGTCTGTTAAGTTGACAGTGTTTGAGGCTCAAAATGCAAAGAATGTTTCGGAATTCAATTCCGTGCAGAATTCAAATGCTCCGAAGAATAATGATTCGGTTAAATTGACTAATGGAAACGCAGCAGTTGATTCGAATGCTGAAAATTCCGTGCTTACTAAAATTGACGAACCGTTATATCAGGGTTGTAGTGTTAAGAACACAGATGCGACAATATCTGATATTAGACAGAGTGGAATGAATGAAATTGTGGAGACTTTTGGTGAGTTAGAGCAACCCGGGGAACAAGATGGGGCCAAAGTGAGTGATGTCTTAAATGAAATGCAGGCATCAGGCAGTAATATGTCTCACTGGTTGAAAAGACAAAATCCCAGGTTACTGACAGTGATTTGGAGAGTGAGTGTTCGGACTTAATCACTGATGAATTGGCTGAA
>TU596812
CAAGGACTTCAGGCTACAGGTTCATTTGAGGTGGAAAGTAGCTAATCCTGTCTATAACAGTGAGGGAACACTGAGCAAAAGTTTTCTTAATGAGAGTTTTCTTAATGTTTTTCTTAATTTTACTTAAATAAAAAGGTAATTAATTGTATTATTGGTCTTGTTGTTATTGTAGCTTGTTTAACCCAAGGTGTTTGGGTCTGTGGGACTTGTTTTAAAGGTTGCTAAAAGAAAAAATATGCTATTTATTATTTCTTCTAACACAAACTCATTGGCCTTGGCTCATTTTCGGTGAAGAACATAAAAAATAACTTCTTTTCAATGACTGCACA

Function

NR:

description
MHC class II beta chain, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000364_00400175_00427556.mRNA False 2756 mRNA 0.40 9 399374 427576
TU596812 True 329 lncRNA 0.33 1 424735 425063

Neighbor

gene id symbol gene type direction distance location
CI01000364_00382475_00385399 NA coding upstream 13257 382475 ~ 386117 (+)
CI01000364_00294611_00295771 NA coding upstream 103424 294401 ~ 295950 (+)
CI01000364_00287825_00289294 NA coding upstream 108302 287047 ~ 291072 (+)
CI01000364_00263052_00264410 NA coding upstream 134627 262985 ~ 264747 (+)
CI01000364_00151094_00203772 NA coding upstream 195517 150818 ~ 203857 (+)
CI01000364_00458726_00460323 NA coding downstream 31150 458726 ~ 461629 (+)
CI01000364_00471523_00472629 NA coding downstream 43947 471523 ~ 472821 (+)
CI01000364_00512592_00513897 NA coding downstream 84255 511831 ~ 514181 (+)
G520208 NA non-coding upstream 22405 376701 ~ 376969 (+)
G520207 NA non-coding upstream 23046 375697 ~ 376328 (+)
G520206 NA non-coding upstream 24544 374577 ~ 374830 (+)
G520089 NA non-coding upstream 65110 333901 ~ 334264 (+)
G520004 NA non-coding upstream 138686 255112 ~ 260688 (+)
G520244 NA non-coding downstream 18885 446461 ~ 446777 (+)
G520252 NA non-coding downstream 29208 456784 ~ 457061 (+)
G520257 NA non-coding downstream 34443 462019 ~ 462225 (+)
G520258 NA non-coding downstream 34996 462572 ~ 463344 (+)
G520260 NA non-coding downstream 36169 463745 ~ 464082 (+)
G520013 NA other upstream 62267 309368 ~ 337107 (+)
G520009 NA other upstream 75143 241321 ~ 324231 (+)
G520012 NA other upstream 144368 250300 ~ 255006 (+)
G520007 NA other upstream 353528 44426 ~ 45846 (+)
G520222 NA non-coding downstream 375 425438 ~ 425708 (+)

Expression


Co-expression Network