XLOC_015419


Basic Information

Item Value
gene id XLOC_015419
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 23414883 ~ 23421047 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033529
ACAGGGAAGAACTTATGGGAGCAAGAGATAACGTAAACTCTTACTAAATCGACATTTATTTCTCAATTATGGCCGTGTAACGTAAAGTGTCACTAGTTaacagttttgtatttttgtaagtaattttagaaataaatgtTCTGTAAGTTAGGTTAAAATGCACAAAACTCCCTGAAGCAGTTTGAGGTACATTAACTTAAAAATCTTGACATGATTCTGTATTTACAGCTTAACGTGTCGCCTAACAcgacaaacagcaaaataatcacTTTTAATAGCTTTACTGAAACGACAGTACAgattttgatgcttgaaaacgTGGTGAATTTCGCTTGTTCTCTGGCGCTTTTCACATTATGTTTATGTATCGTTAGTTACTGGACGTTATGCGACACAGATTAagatattaattacattatacagAAGATAATAGCTTGGAGGTAAGTTAATGTTGACCGCTGAACACAGTAAAGGTAATTTTGGCAGACTTTGTCAAATTAAAAACATTGACTCAGCTACCTGATTCTTCATGTTAAATGCTATTATTAGTGCGTTACCTGTTTTCACCTTTATACTCTGgtttcattcacaaacacatcacAATCTTTAACGTTAGTTCTAACAAATCGTAAATTAACCAATAGTTTTAAAGCTCGTTCTCTTTTGTGGTGTTGCTTGTCATTTAGCCAGAGGTGTCAGTGATTCAGTAAATCACTCATGCTTTTAATTTTATGTGGAGAACTGGTAAGTTACTTAGTTGCTTTCTAACTTGTTTAGAGCTGAAATTTTGATATAAACAGTGGTGCTGTTCTCAGTATTTATGCATCATTTTTTTAGTACCATACCATTTATACAACCATTTATCCAAACTCAAGTGATACAGGATCAAGCGATTGGCCATCACAAAAGTTTGCTTTATGGCGACTGGTGAGTCTccttattttagtttaatttaggcaaagctaaattaattaaaactttttataaatCCAATATATATCTTTCAGGCCTCTCTGTTGTCCTGGATGTGATGAAATGCTGGGACTTCCTTTGTCTTTATTGAATGATTTGTGAGCAGTATCCAGCCGTACGGGCAGCACTAAGAGTCAGGTAATCTACAGAGTTGAACTTGATTACTGATAGCTGAGTGAATACCTTTAGGACAGTGTTTTTCATTCCTGGTCCTGAGATTCACAGCTATGTACATTCTGCATGTCTTATTTTACAAACACGCTAAGTTTAGTTCATAGAGCTGATGAGTCTCTGTGTTTAGTAATAGAGAAATACAACTGTGCTTTGTGTCCTCATTACTCATCACTGAATTAAATCACTGAAGTTAAGTAAAAGTCAGTTGTATAGTACACTCACTGGCTGTTTTATTAGGTATACGCACACGGACCCTTACTAGTACctgattggacccccttttgcctttcggactgccttaatcctttgtggcatagattaaacaag
>TCONS_00033530
ACAGGGAAGAACTTATGGGAGCAAGAGATAACGTAAACTCTTACTAAATCGACATTTATTTCTCAATTATGGCCGTGTAACGTAAAGTGTCACTAGTTaacagttttgtatttttgtaagtaattttagaaataaatgtTCTGTAAGTTAGGTTAAAATGCACAAAACTCCCTGAAGCAGTTTGAGTGATACAGGATCAAGCGATTGGCCATCACAAAAGTTTGCTTTATGGCGACTGGCCTCTCTGTTGTCCTGGATGTGATGAAATGCTGGGACTTCCTTTGTCTTTATTGAATGATTTGTGAGCAGTATCCAGCCGTACGGGCAGCACTAAGAGTCAGtttccaCTCTGGAGGAATCTGGAGTCTTTACCTCTGCACTATAGGAACGCTGAAGAAGATGAAA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033529 False 1473 lncRNA 0.35 1 23414883 23416355
TCONS_00033530 True 405 lncRNA 0.40 4 23414883 23421047

Neighbor

gene id symbol gene type direction distance location
XLOC_015417 rnf2 coding upstream 52950 23351454 ~ 23361933 (+)
XLOC_015415 kifap3b coding upstream 121382 23222939 ~ 23293501 (+)
XLOC_015416 BX548024.3 coding upstream 156986 23257777 ~ 23257897 (+)
XLOC_015414 NA coding upstream 230079 23156012 ~ 23184804 (+)
XLOC_015413 si:dkey-218h11.6 coding upstream 282749 23130389 ~ 23132134 (+)
XLOC_015420 NA coding downstream 29725 23450772 ~ 23451401 (+)
XLOC_015421 BX470197.1 coding downstream 61751 23482798 ~ 23484348 (+)
XLOC_015422 NA coding downstream 120680 23541727 ~ 23609276 (+)
XLOC_015423 NA coding downstream 129139 23550186 ~ 23557515 (+)
XLOC_015424 rpp40 coding downstream 191993 23613040 ~ 23620223 (+)
XLOC_015410 NA non-coding upstream 387905 23025321 ~ 23026978 (+)
XLOC_015408 NA non-coding upstream 422854 22985130 ~ 22992029 (+)
XLOC_015407 NA non-coding upstream 498499 22911192 ~ 22916384 (+)
XLOC_015426 BX649335.1 non-coding downstream 258826 23679873 ~ 23679989 (+)
XLOC_015428 NA non-coding downstream 351871 23772918 ~ 23779429 (+)

Expression


Co-expression Network