XLOC_015428


Basic Information

Item Value
gene id XLOC_015428
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 23772918 ~ 23779429 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033537
CACCTGATGAGCCTTGTGCTTACTGGTGCTGGTGACCGCAGTGGCACCAGAATAGCTCTTCTCCCTCCACATGGAGCTGTTTTTGGTCTGCGCTGCGAGCTGGGGACGAGGGCTGCTCTTTGACTCAAACATGCCCGTTGCTGTGTTTGTGCTCATCAGGTCTGGCGGCGGCAGCATGTCCATCGAGATGCTCCTTGATAAAGCGGCGTTGGCCCCACTGAGGGACTCGTATCTTCTCCAGAGATAATGTGTTTTACCTTGGACCAGGAGTCTTCTCTGCCAGCATCGGTGAGATCCACACAGCTTTCATACCTAGGGAAAACAGTTTGTTTAAGGACATAAAACTCAATGGATGAGAGGCAGTGCTGTATATGCAAACTTGTGGATAATGGTGGAGGTCATGTTCACCTTTGGACAAGCTGAGAAACAGGTGTTTTTCTGTCCCAAATCCACGAACTGTGACCCGCAGAGAGACTCTTGAGGGACTGACTTCTTCTCAAGGTGAAGCTCATCTACATAGAAAACACATCGTAATTTGACCAAAGTGAGCCAGGGCAGGCTTTCCAAACCTGCTATTCTCAGCACTGAAAGCCAGCGCACACGTCAGGTGAAAGTCTATAatcattcaccacatgatcaaaTGTCCACCCTGGATGCATTGGAGGCTGCAGAGACTGAGACTGAAGACTGTGAGGGGTGTGTCAGAGTTACCTTAAGCTGTGGGTCTTGTGCTCCTCATGTCCTTCTGTCCCGCTGTGCAGTGTGAAGCAAAGCATCTCTCACGGGACAGTCCTGTCACGCAGAGCAAAGTCCCTCATTTACAGCCTGACCTCAGGTGTCCGGAAAACTCAGATCAAGACAAGAGTTGAACATAAAAAGGGAAGTGGTGATCATTACAATTACAATAGTGATGATACTAGTGATACTGATGTGTTCTGCTCAGTAGTGCATTCAGGAAAAAGCAAATGGTTATTGTATAACAACTTTTCCCCTTccaatttattcatatttaagtTTCTTAATTAACTTAGTCAAGATAAAACACTTGAGGAATGTTTGGCAAgcaatgttgttgttattattattacacttacagttgaagacaaaaaaaattgcACTCTTGTGAATATTTATCTCCTGTGatctttaaaagagcaaggacatttgtCACAatatttcttttggagaaagttttatttcttttagtttggctgtagtagtaataataataataatactaataataataataataataataataataataataataataataataataataataataataataataataataataatggggtgacgcggtgacacagtgggtagaAGGTTGTTGGGTCAAGCCTTGGTCAGTTttcatttctgagtggagtttgaatgttctccttgtgttggcgtgggtttcctccgggtgctccggtttcccccacagtccaaagacatgctgctataggtgaattgggtaagctaaattgtccatagtgaatgagtgtgtatggatgttttccagtgatggcttgcagctgcatggaagtgcatccgctgcgtaaaaactaattcttgataagttggaggttctttccgctgtggcgcaaccccagattattgaaggaactaagccgaaaagaaaatgaatgaataaatgaatgaatgaattaataaataataataataaataaaaatgctaaaaacactattgtcaatattattatccccttaaGAAATTATGCTTTTTGTacagctacagaacaaaccactgttgttgaTTGACTGCATAATTAGCCAACAGTATCTTacctaagttaacttaattaatttagttaagcctttgaatacCATAGAATCTTGAAAAAATCATTAAGTCAGAGAAGAAAGCCTTTACTAGAAAAATgctaaaatgctttaaattgctttaaattgtttaaatcttATTTGCTTTAAACATCACTTGGCAAATAATTCAAAAAGAA

Function

GO:

id name namespace
GO:0043062 extracellular structure organization biological_process
GO:0031012 extracellular matrix cellular_component

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033537 True 1988 lncRNA 0.40 5 23772918 23779429

Neighbor

gene id symbol gene type direction distance location
XLOC_015427 slc22a13a coding upstream 27628 23731194 ~ 23745290 (+)
XLOC_015425 oxsr1a coding upstream 46313 23677179 ~ 23726605 (+)
XLOC_015426 BX649335.1 coding upstream 92929 23679873 ~ 23679989 (+)
XLOC_015424 rpp40 coding upstream 152695 23613040 ~ 23620223 (+)
XLOC_015422 NA coding upstream 163642 23541727 ~ 23609276 (+)
XLOC_015429 csrnp1a coding downstream 11319 23790748 ~ 23805139 (+)
XLOC_015430 gorasp1a coding downstream 29211 23808640 ~ 23820280 (+)
XLOC_015431 si:dkey-24c2.9 coding downstream 44193 23823622 ~ 23837423 (+)
XLOC_015432 NA coding downstream 157106 23936535 ~ 23940330 (+)
XLOC_015433 CR788285.2 coding downstream 233821 24013250 ~ 24014943 (+)
XLOC_015423 NA non-coding upstream 215403 23550186 ~ 23557515 (+)
XLOC_015420 NA non-coding upstream 321517 23450772 ~ 23451401 (+)
XLOC_015419 NA non-coding upstream 351871 23414883 ~ 23421047 (+)
XLOC_015434 NA non-coding downstream 243369 24022798 ~ 24024448 (+)
XLOC_015437 BX000358.1 non-coding downstream 481788 24261217 ~ 24261296 (+)
XLOC_015440 CR384062.1 non-coding downstream 569160 24348589 ~ 24351040 (+)
XLOC_015418 NA non-coding upstream 293672 23406453 ~ 23479246 (+)

Expression


Co-expression Network