XLOC_015429 (csrnp1a)


Basic Information

Item Value
gene id XLOC_015429
gene name csrnp1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 23790748 ~ 23805139 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030867
GTGAATGTTCTGTGACCGTCAGTGAGTTTGTGCACGCGCTGAGCGTCATGACTGCTGTTTTTGTCCTCATATTACTGTGTACGTCAGGCGGTGTGGGGGGAGCTTTCCACTGACGAGCACAACTCAACAACAGCTGATCTCACTGTACTCTACGTGCATCGACGACTAGAAAGAGTCTTAAGTTTTCAAGCGTCCTATGGTGGTCTCTTCCACTCATGAAATACAGATACACAATTGCTGGATCACAATGACTACATCGCAGCGTGGGGGTTTAAAGAGAAAATATGGTTTTCCAGATGAAGATGCGGTTTACTCTTCCTCGTCCCCGTCTTCACACTCTGAATGGGACTCTGATGAAGACAGTCCACAAAGTGACAGCATGGACCCCGGACCTATTGGCTCTTTCTCTTCGAACCATCACATGCCAATTTCATCCATCCTGAAGAAGACGAAAGGCAGTCAATCCAAAGGCAGTGttcggtttggttcggttacagtGTTCCTTTTTCAGCGCTGTCAAGGTTACAGCAGTGTGCCCAGTCATGGTGGCTGCACACTGGGCATGGTTAGATGGCACACTGCTCGTCAGCAGTTCACCCTGCCAGAGCACGCAGAGGAACAACAGCGCTTGAGACTAGTGAGAGTGCGTGAGAGACACCAAGAGGAGAAGCTGGAGGCTTTGAGACAGAAGTTGATCAGCAGTGGAACTCTCACAGTGACCGAAGCAGCCAGACTGACAGTGAATGATGTCCCGGATGAGGATGGCGATCTCAGTAGTGCACAACTGAAGGACATGGGTTCCCTTCGCCCCTACTCCTCCAAACGAAGACGTGCGATGTTGAGAGCCGCAGGGGTGTTGCGCATCGACCGGGAGGAGAAGAGGCAGTTGCAGGATTTGCGGCGCTCGAGGGAAGACTGCGGATGCCACTGCAAGGGCTTCTGTGAGCCCGAGACCTGCTCCTGCAGTCAGGCTGGCATCAAGTGCCAAATGGATCGTTCCAACTTTCCCTGTGGATGCTCAAAGGAATGCTGTGGGAATCCCGCAGGCCGCATTGAGTTCAACTCTAGCCGTGTACGGAGCCactacatccacacacacatgaaaCTGGAGCTGGAGAAAAGGCTCGATGACACCCAACAGCAATCCACAGAGAGAAACAAATCCATCCCAAATCCTGTAGAAAGCAGCTCTCCGCCCTTCAGACAAGCGGAAAACAGCTGGAGCAGCGACACCTCCTGCTCGTCCTCTCTCAGTCTGGACTCGGAAACAGATGCGAGTCCTTCCTCAGAGGACATGGAGGACACTAGACTCACTCACATACTCAGCTTCTCCGATTCAGATGCGGACAGGTGTCCTTACATTAAAGACTACGATCTGTCCAAAGAAGCTGCTCGGTTCGCATCCACAATTGATAATGAACAATTAAAAACCAAACCCCAACTAGAGTATCTGGATGAAAATGCCAACCAGGTCACGGTAAAATGTGTAAACGATCCTTTTTTTGATATCCCTAATACACCTTCTGCGTCTCCAGATCACACTGTGAATGGTTACATGGACCTCAGTCTGTCTTCGGACTCTGACTTGATGTTTTTTGACGCTTTTCATgagtttaatcattttaaaacatacGGTCATATGGACTACATCTCACATCTGCAGTTTCCTCGCTGTCCCAGTCCTGCTCAAACAGAGGATTCAGGAATCAGCCTTCTGGAGTCTCTTGTCGGAAGTTCCTAAGGTTTATTTACAGAcaaatttgtttttttgtacagTATGGCTTTATTCTCATTTTGTTTGAGAAGAAAAGCGTGAATATTTCCTGAATTGAAGGATATTCCTTGGAAATGTATTTTAGGATGTTGATGTGAGTTTGTGATCATACTGTTAAAACCACTCTGCATGATGTGTTATGCGTTGTGTGTCAGTTTTAATTTTGTTGCCAAATGTTTTTACATGTGTACAATGATTTcaggtaattattattttttatttattctttataaacTAAAGGCTTAATTATCTTCTAatcatctattttttaaaataagatttctaATTAATCCCATTGCAGTAATTACAGTTTTACTGGTAAATGTTTACTAAAAaaacaattcatatttatttctaaCAAATGTTTTAACAGATTGTGTATGTAATGTGaacatctttttttatatataatgcaGTTAACTCTCTTAGTGTTTCACTAGCTGTTATAAAATCAATAGAAATTATCATAGAATTTGTAATGGATTTATTGGTTATAtggggggctcagtggttagcactgtcacttcacggCGGGAAGGTCACTGGTgtgagtcttggctgggccagttagaatttctgtgtgtagtttacatgttctccctatgtttgcgtgggtttcctttagatgctccggtttcccccacagtccaaagacatgcactatactataggtgaattgaataaactaaatttgctgtagtgtatgtatgtgtgtgaatgaaagtgtagaGGTGTTTCCcgatattgggttgtggctggaagggcatccgctgcgtaaaacatatgctggaatagttagtggttcagtCCACTGTTGCGACCTCCTGAAATAAAAACTAAGCTGacgaaaaacaaatgaatgaattattggtTATAATTTAAATTGTCTTGGGTTTAATGGAAACTGTAATGGTGCCTACTTGTCTCTACTTGTATTTTTTGTAAATCCTAatgcaatgtaaatgtaaatcctAAAGTTTGTCCCAAAACACTTTGGAAAGCAGTAAAAATGTACTGCTGTTGATGGTTTCATTTTGATGGATTGTAATAGTTTTTGATGGTATTTGTAGTGGAAACCATTAAAACTTCTGTGatatttctattgttttttttcagcaggtaTGTAAgttctgttttcattttttttacatgacTTTTATTTTCAAGGGCCAGTAAGCCTTAGTGATTTTCATTCAAATGAGTGACATGTAAAACAGAAATTCAGGCTTTTTGCTTTAAgaaactttcattttatttattagtggtatttacaacatttcagtaaatgtttttctacttttaagaatgtttttcttttttatatctgTAGAAAAACTCAtcctaataaaatatattttacaaaa

Function

symbol description
csrnp1a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Acts upstream of or within primitive hemopoiesis. Predicted to be active in nucleus. Is expressed in intermediate cell mass of mesoderm. Orthologous to human CSRNP1 (cysteine and serine rich nuclear protein 1).

GO:

id name namespace
GO:0060215 primitive hemopoiesis biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-475 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Acts upstream of or within primitive hemopoiesis. Predicted to be active in nucleus. Is expressed in intermediate cell mass of mesoderm. Orthologous to human CSRNP1 (cysteine and serine rich nuclear protein 1).

Ensembl:

ensembl_id ENSDARG00000031426

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030867 True 3138 mRNA 0.42 5 23790748 23805139

Neighbor

gene id symbol gene type direction distance location
XLOC_015428 NA coding upstream 11319 23772918 ~ 23779429 (+)
XLOC_015427 slc22a13a coding upstream 45458 23731194 ~ 23745290 (+)
XLOC_015425 oxsr1a coding upstream 64143 23677179 ~ 23726605 (+)
XLOC_015426 BX649335.1 coding upstream 110759 23679873 ~ 23679989 (+)
XLOC_015424 rpp40 coding upstream 170525 23613040 ~ 23620223 (+)
XLOC_015430 gorasp1a coding downstream 3501 23808640 ~ 23820280 (+)
XLOC_015431 si:dkey-24c2.9 coding downstream 18483 23823622 ~ 23837423 (+)
XLOC_015432 NA coding downstream 131396 23936535 ~ 23940330 (+)
XLOC_015433 CR788285.2 coding downstream 208111 24013250 ~ 24014943 (+)
XLOC_015434 NA coding downstream 217659 24022798 ~ 24024448 (+)
XLOC_015422 NA non-coding upstream 181472 23541727 ~ 23609276 (+)
XLOC_015423 NA non-coding upstream 233233 23550186 ~ 23557515 (+)
XLOC_015420 NA non-coding upstream 339347 23450772 ~ 23451401 (+)
XLOC_015437 BX000358.1 non-coding downstream 456078 24261217 ~ 24261296 (+)
XLOC_015440 CR384062.1 non-coding downstream 543450 24348589 ~ 24351040 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_07360794_07364249 CSRNP1A coding CI01000004 null 7359772 ~ 7364599 (+)