XLOC_015439 (mrpl34)


Basic Information

Item Value
gene id XLOC_015439
gene name mrpl34
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 24317465 ~ 24320183 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030883
GAAAACCGCCAGTCCACCAGTAGAGGAAGAGACCAGAGACACGTGATGACTTTGCTGTGATATTGATGGACTGAAGCTGGAGCCGAGATGAACACATTACGGACAGCTTTTTCTCGCTTAAATGGGGCACACAGTTTGTGTTGCAGGAATGGTGCTCCCTCATCCATATTCAGCTGCAGTCAGCTACGCTCTCTCAGTTCTGTCCTGTCGAGGTCAAGACCTGAGCAGAACAGCATCCTGCAAGGGACGCTGAACCCCAAAGTTGAGGGAGCCTTTCAGCAGCCGCTCTGGAACCATCAGCAGGTCCGCACAGTCAAACGTGGGACAGAATATCAGCCAAGCAACATCAAACGTAAGAGGACCCATGGCTGGATCAAAAGAATTAGCACTCCAGGTGGGATCGAAGTAATCCTGCGCCGAATGCTCAAAGGACGAAAATCTCTCACTCATTGAGACTCTAACTGGACATGTGCTTTGAAGTCATTCTCAGTTGAATGTCAGCTATGTAGTGGAGCTTTTGGATTTCTGTTTAAAATAGTCATCGATCTAAGAAATGAATGCCACCAAAAGGctttttttaaagttcagtttagtggaTCTAATCTCAGTTAATAACATGTGAAGGGGTTTGATGTCGTATCAGAGCAGTTTCTGCTTGTTTCCCGAATGATCTCAGCACACATAAtcagaaataaaattaataaataaaaaacatctgcCGTGAAGTATGGTATCaatttattttagcagtgtagtTTATTTTAAGAGCAAACGGATGTGCATTACTTGGCAAAATGATAACagtacaaaagtaataaaaaaacagGGCCGTGATGTAACATTGTGTATAATATGGAAGCTTGTTTCCAGCACAGATGTCAAAAGAGGTACatatacagcagggaaaaaagtattaaacacatcatCATTTATCCCG
>TCONS_00030884
GAGGAAGAGACCAGAGACACGTGATGACTTTGCTGTGATATTGATGGACTGAAGCTGGAGCCGAGATGAACACATTACGGACAGCTTTTTCTCGCTTAAATGGGGCACACAGTTTGTGTTGGAATGGTGCTCCCTCATCCATATTCAGCTGCAGTCAGCTACGCTCTCTCAGTTCTGTCCTGTCGAGGTCAAGACCTGAGCAGAACAGCATCCTGCAAGGGACGCTGAACCCCAAAGTTGAGGGAGCCTTTCAGCAGCCGCTCTGGAACCATCAGCAGGTCCGCACAGTCAAACGTGGGACAGAATATCAGCCAAGCAACATCAAACGTAAGAGGACCCATGGCTGGATCAAAAGAATTAGCACTCCAGGTGGGATCGAAGTAATCCTGCGCCGAATGCTCAAAGGACGAAAATCTCTCACTCATTGAGACTCTAACTGGACATGTGCTTTGAAGTCATTCTCAGTTGAATGTCAGCTATGTAGTGGAGCTTTTGGATTTCTGTTTAAAATAGTCATCGATCTAAGAAATGAATGCCACCAAAAGGctttttttaaagttcagtttagtggaTCTAATCTCAGTTAATAACATGTGAAGGGGTTTGATGTCGTATCAGAGCAGTTTCTGCTTGTTTCCCGAATGATCTCAGCACACATAAtcagaaataaaattaataaataaaaaacatctgc

Function

symbol description
mrpl34 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL34 (mitochondrial ribosomal protein L34).

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005762 mitochondrial large ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
ko03010 Ribosome
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-070912-582 Predicted to be a structural constituent of ribosome. Predicted to act upstream of or within translation. Predicted to be located in ribosome. Predicted to be part of mitochondrial large ribosomal subunit. Orthologous to human MRPL34 (mitochondrial ribosomal protein L34).

Ensembl:

ensembl_id ENSDARG00000092954

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030883 False 937 mRNA 0.42 2 24317465 24320183
TCONS_00030884 True 694 mRNA 0.45 2 24317487 24319965

Neighbor

gene id symbol gene type direction distance location
XLOC_015438 fitm1l coding upstream 8783 24304854 ~ 24308682 (+)
XLOC_015437 BX000358.1 coding upstream 56169 24261217 ~ 24261296 (+)
XLOC_015436 map4l coding upstream 64959 24177006 ~ 24252506 (+)
XLOC_015435 kcnh2a coding upstream 148795 24080694 ~ 24168670 (+)
XLOC_015434 NA coding upstream 293017 24022798 ~ 24024448 (+)
XLOC_015440 CR384062.1 coding downstream 28406 24348589 ~ 24351040 (+)
XLOC_015441 pimr68 coding downstream 32314 24352497 ~ 24355324 (+)
XLOC_015442 nr2f6a coding downstream 54122 24374305 ~ 24386382 (+)
XLOC_015443 NA coding downstream 164090 24484273 ~ 24497841 (+)
XLOC_015444 rps28 coding downstream 187414 24507597 ~ 24509698 (+)
XLOC_015433 CR788285.2 non-coding upstream 302522 24013250 ~ 24014943 (+)
XLOC_015432 NA non-coding upstream 377135 23936535 ~ 23940330 (+)
XLOC_015428 NA non-coding upstream 538036 23772918 ~ 23779429 (+)
XLOC_015446 NA non-coding downstream 283109 24603292 ~ 24612068 (+)
XLOC_015449 NA non-coding downstream 396131 24716314 ~ 24720787 (+)
XLOC_015455 NA non-coding downstream 583483 24903666 ~ 24906615 (+)

Expression


Co-expression Network