XLOC_015442 (nr2f6a)


Basic Information

Item Value
gene id XLOC_015442
gene name nr2f6a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 24374305 ~ 24386382 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030887
acacacacacgcgctcgcTCACAGGCACGCGGCGCGCGCACTCTACTGGACACTGGCTCGCGCTCTCTTGTCCTCCTCAAGCCCGCGCGACTCTGCCACTTCTTAAAACAGGTCCTTATTTGGAAATAAACTTCCAAACTCATTACCCTTGGTGTGACTAAAGAAGCGGATCCAAAGAATGAATATGATCAGTCAAGGAGGCAAAGCAACATGTACAGCCCGCTGGCTAAAGAAGAAAGTtaactgacacagacacacacaagtgaCTCAGAACTCGTGTCTGAGCCTAAATGTGTCAGACGAAGCTGCGGACAATTACCAGATCCAGAGGCCTTCATATCTTCTCATTTTAGAACACGCAGCTGTCAAAAAAAGGGGTCAAGTGAAACTGTCTGTGCCGACAGCACGTTTGGGAGTATCATTCTTCCTCGGTTGTGCTGAGAACTAAGCGATGGCCATGGTGAGAGGGGGGTGGGGAGATCCCAACGGGGAAACAAATGGACTTGGTGACAAGGGTTACCTGAGGGGAGATGAAGATGACGGGTCACCGCAAGGAGGCGGCAGCGACATGGAGGCCGGTGAGGATGATAAGGGATGTGTGGTGGACTGTGTTGTCTGCGGCGACAAGTCCAGCGGGAAACACTATGGTGTGTTCACCTGTGAGGGCTGCAAGAGCTTCTTTAAACGAAGTGTCAGACGAAACCTTAACTACACCTGCAGATCAAACCGAGACTGCCAAATTGACCAGCATCATCGCAACCAGTGTCAATACTGCCGTTTAAAGAAGTGTTTCCGAGTGGGAATGCGTAAAGAAGCAGTTCAGCGTGGACGGATCCCACCTTCACATTCGAGCCTGAGCCCATCTACAACTCCAGTAGGCGGTAATGCCGGCGGTGGTGTGAGCGAGTTCTACAATGGGCAGCCGGTGTCCGAGCTCATCTCCCAGCTCCTGCGGGCAGAGCCTTACCCTAACAGCCGCTACAGCCACCAGTACAACCAGCAGATGCAAGGCGGTGGTGGCGGTGGATCTGGCATGGGCATCGACAGCATCTGTGAGCTCGCTGCCAGACTCCTGTTTAGCATCATCGAATGGGCCCGAAACATTCCGTACTTCCCCGAATTGCCAGTATCGGAGCAGGTGGCCTTGCTGCGGCTCAGCTGGAGCGAACTGTTTATTCTGAACGCAGCTCAATCTGCCCTGCCACTGCACATGGCCCCGCTGCTGGCCGCCGCAGGCTTCCACTCCTCACCCATGTCCGCGGAAAGGGTGGTGTCCTTCATGGACCAGGTGCGCGTCTTCCAGGACCAGGTGGAGAAGCTGACGCGTCTGCAGGTGGATTCGGCAGAGTACAGCTGTCTCAAGGCCATAGCGCTCTTCTCGCCAGATGCGTGTGGGCTGACAGATCCCGCTCATGTAGAAAGCCTGCAGGAGAAAGCTCAGGTGGCTCTTACCGAGTACGAGCGCATGCAGTACCCCGGGCAGCCCCAGCGTTTCGGACGGCTCCTGCTGCGACTGCCCGCTCTGAGGGCCGTGCCCGCCAGCCTCATCTCTCAGCTCTTCTTCATGCGGCTCGTGGGCAAAACGCCCATCGAGACACTCATCCGTGACATGCAGCTGTCTGGCAGCTCCATCAGTTGGCCGTATGCTCCTGGACAATAATCTTCATCACATGTGACCAGCCTGAACGGGAAGATCTTGGTctgacttgttttgtttttttatatccaCACATTTACATCTGATATTCAGTGTATTGCCTAATGCAACAGGGTCGCACTATGGAAATGGTGAATTGGGTATTATGTTGCAGATCGGTGAACTTCAACATGACTTGAAGTATTTGTTATCTGCCAACCAAAGGTAAGACGTGAGGTACCATTTTTTAAAGATTGTAATTAATTGGAAATGGGTTCAAACCCTAAAAGGCGAGATCTGACAGTTTGGTGTCAACAACACGAAGGTCACTTTGGACTGTTCCCGGAGGCCTGGGAAATCAAGTTCCCATCATGCTCCGCTCTGCCCTGTCCTTGTGCACCACAAAGCCTGAAGGAGGAGGAAGTAGACACGATGACATCCAAACAAACCAAACCCAAACAGTCTGAATTAGGACTAAGGCATTTGTTATGCCAACGAGAACTTGTATTTTTTAGCTCTTTTTACCCTTGTCAAAGCTAACGCATTTCTGAGGAGAGAGTGAAATTTGCAACTGATTATGTTGAATTAAGTATAGCTGCGGACTTTATTTGTACTTTGAGTTAAGGTACAGGCTCATCTCATCAAGAATGATTCATATTTTGGAGCGCACACCCTTCATTTGAGATAGATGACAGGTGAAGtagtcttgtttttttcttttcagacaGACACCAATGAATTTTCTTCTTAaaaaggtttcttttttttttttttttttttagttttttcagaCTTCCACTGGTAATGAAGTCCTATTATGAACGTCGACCAAAAGAAATACCTCTACAGTCTGTTGAGACTCTGTGTCATTCACGGCTGTGTCAGATTTTCTATGTACCAACATACTTGAGCTGCTCACTTTACACTAAAGAGGAGTGATTGGATCAATCTGTCTGTTATGTTTGTTTCTCGAAGGCCGTTTTCAGCAGGAAACCGGCTGTGGCTGTTTTGTCTTTCGTGGAGCATTGCTCTGGTGTGGCGTTTCACAGGTGACAGCATGTTGTATTGGCTCTTGTTGTGAGATGTCCGTTTTCTAGCCTTATCATACATCAGAATGACTAATATTACCTCATATTTAGGCCTTTAAAACATATCAGACGGTCTAATAGACATCAATGCATCAAATCGGCAACGTGTacagttttcattttaatatctTTGTCTTTTTAAATACTTGTGTATGACGGCTTGATTAAACAAAGTATCATACAACGAA
>TCONS_00030888
CGAGAGCTTACGACGTGGTTTCTTGGCTTCCGTTTTCGGTTTAGTCGTTTCAGTCGCCGCCGCGGTAACTGTTGGAGGGACTCTAAAAGTCTGTCCTCATTTCACAACAAACAGGCGCAGTGAAGCACTTCCTTGAACAATCTGTATGCTGGAGGAAGACGCTGCTTTTGATGCCCAGATGCTCTGATTAGTGTGTCCTTATTTGGAAATAAACTTCCAAACTCATTACCCTTGGTGTGACTAAAGAAGCGGATCCAAAGAATGAATATGATCAGTCAAGGAGGCAAAGCAACATGTACAGCCCGCTGGCTAAAGAAGAAAGTtaactgacacagacacacacaagtgaCTCAGAACTCGTGTCTGAGCCTAAATGTGTCAGACGAAGCTGCGGACAATTACCAGATCCAGAGGCCTTCATATCTTCTCATTTTAGAACACGCAGCTGTCAAAAAAAGGGGTCAAGTGAAACTGTCTGTGCCGACAGCACGTTTGGGAGTATCATTCTTCCTCGGTTGTGCTGAGAACTAAGCGATGGCCATGGTGAGAGGGGGGTGGGGAGATCCCAACGGGGAAACAAATGGACTTGGTGACAAGGGTTACCTGAGGGGAGATGAAGATGACGGGTCACCGCAAGGAGGCGGCAGCGACATGGAGGCCGGTGAGGATGATAAGGGATGTGTGGTGGACTGTGTTGTCTGCGGCGACAAGTCCAGCGGGAAACACTATGGTGTGTTCACCTGTGAGGGCTGCAAGAGCTTCTTTAAACGAAGTGTCAGACGAAACCTTAACTACACCTG
>TCONS_00030889
TCCCAACGGGGAAACAAATGGACTTGGTGACAAGGGTTACCTGAGGGGAGATGAAGATGACGGGTCACCGCAAGGAGGCGGCAGCGACATGGAGGCCGGTGAGGATGATAAGGGATGTGTGGTGGACTGTGTTGTCTGCGGCGACAAGTCCAGCGGGAAACACTATGGTGTGTTCACCTGTGAGGGCTGCAAGAGCTTCTTTAAACGAAGTGTCAGACGAAACCTTAACTACACCTGCAGATCAAACCGAGACTGCCAAATTGACCAGCATCATCGCAACCAGTGTCAATACTGCCGTTTAAAGAAGTGTTTCCGAGTGGGAATGCGTAAAGAAGTTCAGCGTGGACGGATCCCACCTTCACATTCGAGCCTGAGCCCATCTACAACTCCAGTAGGCGGTAATGCCGGCGGTGGTGTGAGCGAGTTCTACAATGGGCAGCCGGTGTCCGAGCTCATCTCCCAGCTCCTGCGGGCAGAGCCTTACCCTAACAGCCGCTACAGCCACCAGTACAACCAGCAGATGCAAGGCGGTGGTGGCGGTGGATCTGGCATGGGCATCGACAGCATCTGTGAGCTCGCTGCCAGACTCCTGTTTAGCATCATCGAATGGGCCCGAAACATTCCGTACTTCCCCGAATTGCCAGTATCGGAGCAGGTGGCCTTGCTGCGGCTCAGCTGGAGCGAACTGTTTATTCTGAACGCAGCTCAATCTGCCCTGCCACTGCACAT

Function

symbol description
nr2f6a Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in anatomical structure development; cell differentiation; and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in brain; retina; retinal inner nuclear layer; somite; and ventricular zone. Orthologous to human NR2F6 (nuclear receptor subfamily 2 group F member 6).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0030154 cell differentiation biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0048856 anatomical structure development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0004879 nuclear receptor activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0003707 steroid hormone receptor activity molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-4362 Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity and nuclear receptor activity. Predicted to be involved in anatomical structure development; cell differentiation; and negative regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in brain; retina; retinal inner nuclear layer; somite; and ventricular zone. Orthologous to human NR2F6 (nuclear receptor subfamily 2 group F member 6).

Ensembl:

ensembl_id ENSDARG00000003607

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030887 False 2912 mRNA 0.49 5 24374305 24386382
TCONS_00030888 False 800 mRNA 0.49 2 24374669 24376609
TCONS_00030889 True 729 mRNA 0.55 3 24376373 24382041

Neighbor

gene id symbol gene type direction distance location
XLOC_015441 pimr68 coding upstream 18981 24352497 ~ 24355324 (+)
XLOC_015440 CR384062.1 coding upstream 23265 24348589 ~ 24351040 (+)
XLOC_015439 mrpl34 coding upstream 54122 24317465 ~ 24320183 (+)
XLOC_015438 fitm1l coding upstream 65623 24304854 ~ 24308682 (+)
XLOC_015437 BX000358.1 coding upstream 113009 24261217 ~ 24261296 (+)
XLOC_015443 NA coding downstream 97891 24484273 ~ 24497841 (+)
XLOC_015444 rps28 coding downstream 121215 24507597 ~ 24509698 (+)
XLOC_015445 angptl4 coding downstream 150380 24536762 ~ 24542518 (+)
XLOC_015446 NA coding downstream 216910 24603292 ~ 24612068 (+)
XLOC_015447 mast3a coding downstream 251985 24638367 ~ 24683365 (+)
XLOC_015434 NA non-coding upstream 349857 24022798 ~ 24024448 (+)
XLOC_015433 CR788285.2 non-coding upstream 359362 24013250 ~ 24014943 (+)
XLOC_015432 NA non-coding upstream 433975 23936535 ~ 23940330 (+)
XLOC_015449 NA non-coding downstream 329932 24716314 ~ 24720787 (+)
XLOC_015455 NA non-coding downstream 517284 24903666 ~ 24906615 (+)
XLOC_015456 NA non-coding downstream 525911 24912293 ~ 24927754 (+)

Expression


Co-expression Network