XLOC_015446


Basic Information

Item Value
gene id XLOC_015446
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 24603292 ~ 24612068 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033541
GTTTCGCTCCTCTTGGGCTCCGCTCTGGTTCAATGAGACGCTGCTGCGTGCGCGCGTCCGTGCGCGTGGGCGTTGAGACCACGCACATCTGGAGCGCGCGGGTCCTCGTCTGTTCTACACAGAGATTCGAGGATTATGTGAACGAATGAAGATTAGAAACAGGGATTTAGCCATTCTGCTTCTGATTCTGTCGGTTCTATAATCGGTAATTCTAATGGCTGAAGAAATACTACTGCACAGCTGAGAAATCATTTGATGAGATTActtcagaacagaacagaacagaacagataaCGAATCAATCAAAATCTTGTAAAGCTGTCAAACGGACATAGGTGATATAAGTTCACCTACACATTTTGATCATGGATGTAAATCGCACTTGCTCAGGAGTTAATTCTACAGAGAGTTGCACTCCTGAAAACCAATCTTCTGTTGGACTTGCTGTTGGCTTGCCTATATTCTTTGTAATCTTGTTGCTGGCGGGGATAGCAGCACTATTGTGGTTTCGAAGCAGAAAATCAGTTTCTAACGTCGAGTTATCTAATAAACTTAAGAGCCAAGATAACAGCCACATGGATCATTCCAGGGATTCTCCGTACAGTGGATACGCCGGAGGGCCTCAAGCCACACCACAGAGCCCAATCTATGAGAACTTTCAGAGCGGACAGTCCAGTCAGCATCAGTTTCAGAGGAGTGCCGTACAACATGAGGACAAGCACAGAGTCCACCAGGCGCACCTGCAGTGTGATCCGCATGATGCAATCTACAGTAACGATCCTGCCCTCTTCCACCCAGATCAGACAGAAATCTCGGAGGATGTTTACATCATGCCAGATGCTTGAACGCCTGACATTGCTTGCTGTCcagtattatttcttaaaatgtaAAGTAGAAAAATTTGTGCTGGCATGATGTGAAATAGTAAGTCTTTAGTTTCAGAGGGAAAAACCCCATATATCATTTTATCTGAATGGAAATGTATAGGGTGTAGACGTTCTTCTGTTGTATTATAAACACTTTAATAgggtagttcaaccaaaaaaaggAACATTTACTCGCTGTTTACTCAACCTTAAGTGGTTTcaaccctttatgagtttatttcttctgttaaacacaaaagaagactgttggaaaccggtaaccattgacttccattgttggAAAACAAATAcactactatggatgtcagtggttacaggtttgtaAACAccatcttctttggtgttcaacagaagaaagaaaatcataaaggtttggaaccagtaaaagaaaagtaaagaatgacagaatattcagttgTGGGTGAACTTTCCCATTAAGATTTGTTTGAAAGAACCACTTACTCTGGATATTCATtcagttttactttattttacataaaatagttTAAACCTTGAATAAATGTgctccaaatataaaaccaacttttaaAGTACAATCTGAACAAACTCTAAAACAAGTTATGATCTTGATCTTTCCAATGCAAACATCTAAAGATTCTTAAATCGCTACATTTACTAAAAAGTTTCTGTGAAACCGATAGAAATGATAAAGAGTTCATGGtaaaaacaagaacaaatatCTGTCAATGGGCTCTGAAAGTCAACTCAAGTCATTTCTACTGCAATAACCGATATTTGTTTTTGCTTGCTTAACTCAATTTcgttgtatttaataaaaaacaagacCTAATATCTTTACTTTGCATCTCAAGAAAGTGCATCTTGATTTAAggaattttagatatttgtatGGGAACAGAAGAGCAATGTTTTGATCTTGTGGTTGCTTTTTGCAGTGCATGCAACATTTGTAAGATTTTCTGCTCTAATATAAGTCATTTTAAAGGCCTTAAAACGTTGAAGagtaagaaaacattttttcCAACATATCATTTTGAACTGAGTGATTGGAATGCCCTCACAAACATTACATCAACCAACCTTTTCTGTATTGACTGAACTCAGTGAGACAGCAAAACATAATCATGACCTGACTGATCACAGTTTAACAGGTGTCTCTGTCCATTTCATGCTGGTACAGACTGGTTTATGCTGGCTTGGTTGACCAACATAGTGTTTTCCTCTAGAAATGCTTGTCTATATTTTCAAACACAGTTTCTTACGTAAATCTGTTACAGTTTCTTCAACAACAAAATGCATTAcgactattttattattaacagtaataagaaatgtttcttgagctcAAAATCAGCATAGAGTGATCTCCAAAGGATTATGTGGAAaaagaaatgtaatattatttcacAGAAGTACAGTTTTTGCTGTATTAATGATCAACATCGGTCCACAAACATTCAAAACCCACTAAGCCCAAATTGCAGTAATGGTAGAGAGTGTCCACGTTGTGTAACACGCCACATATTTCATAAGAATCTTTTTTCTCATGCTTTTAAAtttattagttgactttaataatCATCCAGactgtgtctttttatttttatgtcactGTGACTCATTGAAATCGGCTTTCTTTAGCTACAAATTAGCTGAGATGACTAAACGAAAGAAGTGGAACATTAGACAGTAGGTCAGCTCATTTGGCAGTTCGGTGTCAGAATGTCTCAGTGAGAGACGGAGAAAGCTTGACCTAATCATAAACATTTCTCTGAAATGTAGGTTTTTTTCAGTTGCTGCATATCCTGTTAACAAGTCACTGTGTCATTTCCCAATCTTAGATCAATGAGATTGTTGATCACATTAAATGAACTTTAATTTACCTCAGTAGTCATGAGAAGGCTATTCTTCCAAATTACATTAGAATTGCATCAGAAACATTATGCTGAGTCAGTcccattaaagggacagttcaaccaaaaatgaaaatttgctgcaATGTACTCACGCCGTTAAAAATGTGGATGAATTTCCTTCAGTAGAATGTAAAATTGTGGTCCTTTGTGATTAATGAAATGTGAGTTAATGCTGTCATTGCTACATggaggtcttatgaagcaaaatgCTTGATTTGAGCAAAcactaaacattattattaatccaCATCCGCATGAGTATTGCATAATGTTGTATAATATTGTTGAATGTACAACAATGATGTAAATAATGCTCAGTTTTTTTGTTATAGTCAATTTGCTTTACTTCCTTTAGATCTCGAAGAATAATCAGAAGCCTCAAAAATGGTGTTATGTTATGAATAAAACAGATTCAAAAATAACCACATTTTTGCTAACAATCCACTTTAATGTTAACCTGAGGAAGAAGTCAGCTAAATCTTAAGTAAGTTaacagtaaatgttcattttttggtgaactgtatATTTTAGATGGCAGCACTGCCTCCAGAAGGCCTCAAAAATAAGGCTCGTGTGTGAGAATCATTCCACCACATCTTATATCTTATTATTCTTCCTGACAAACATTTGATTTATGAAATATGCCTGTCATCCTTGTCAGTCAGCGATTAGTTTATCTAACATGTTGACAAACAAGGCTGAAGGAGAAAGTTTGAATAATCATTCATGTCAAGTAGCCATCATTTTCCAAAGAAAGGATTTGTAAATTTGTGGATGTCTCAGCATTTCCTGTATAATTATAAAACTTGTTAtctatttaaaatgtctttaaacgTTTCATGTATACGAGGCATTATACATAAAACCCAATACAGAATAACGTTGAGTACCATATTGTCTTTCTAAAATGGTTATCACAGAATAGaagtattaataaagtcatatatataatttttaatg

Function

GO:

id name namespace
GO:0009060 aerobic respiration biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0005739 mitochondrion cellular_component
GO:0003779 actin binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033541 True 3745 lncRNA 0.36 4 24603292 24612068

Neighbor

gene id symbol gene type direction distance location
XLOC_015445 angptl4 coding upstream 60774 24536762 ~ 24542518 (+)
XLOC_015444 rps28 coding upstream 93594 24507597 ~ 24509698 (+)
XLOC_015443 NA coding upstream 105451 24484273 ~ 24497841 (+)
XLOC_015442 nr2f6a coding upstream 216910 24374305 ~ 24386382 (+)
XLOC_015441 pimr68 coding upstream 247968 24352497 ~ 24355324 (+)
XLOC_015447 mast3a coding downstream 26299 24638367 ~ 24683365 (+)
XLOC_015448 pik3r2 coding downstream 88854 24700922 ~ 24755347 (+)
XLOC_015449 NA coding downstream 104246 24716314 ~ 24720787 (+)
XLOC_015450 ifi30 coding downstream 150499 24762567 ~ 24767470 (+)
XLOC_015451 mpv17l2 coding downstream 158367 24770435 ~ 24778912 (+)
XLOC_015440 CR384062.1 non-coding upstream 252252 24348589 ~ 24351040 (+)
XLOC_015437 BX000358.1 non-coding upstream 341996 24261217 ~ 24261296 (+)
XLOC_015434 NA non-coding upstream 578844 24022798 ~ 24024448 (+)
XLOC_015433 CR788285.2 non-coding upstream 588349 24013250 ~ 24014943 (+)
XLOC_015455 NA non-coding downstream 291598 24903666 ~ 24906615 (+)
XLOC_015456 NA non-coding downstream 300225 24912293 ~ 24927754 (+)
XLOC_015461 NA non-coding downstream 518455 25130523 ~ 25137789 (+)
XLOC_015468 CR392012.1 non-coding downstream 1422107 26034175 ~ 26039606 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_07823292_07824588 NA coding CI01000004 null 7822836 ~ 7826203 (+)