XLOC_015450 (ifi30)


Basic Information

Item Value
gene id XLOC_015450
gene name ifi30
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 24762567 ~ 24767470 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030902
ATCGCACCTTTTTCGCTGGAGGAAGAAGAAAGTTTAAAATGTAGGACGTCCAGATTTTTATTCAGACTTCAAGACAAGCTGAACACTGGGAATCATCATGTTCGGCTTTAACCTGTGCGTTGTGCTCGTCGCCGTGTTTTCTCTGAGTAAATGCAGCGCTCGGTTTGTTTACTCCTGTAAATATCCGCCTTCACAATGGTGCAGCTCCGAGGACATAGCAGCTGAATGTGGGGTGCTGGAACAATGCATGAAGTATAACTCGACAAAGGCCGCTGACAAGGTGAAAGTGAGCCTCTACTATGAATCTCTGTGCCCAGGATGCAGAATGTTTCTTACATCTCAGCTCGTGCCAACCTTGATTATGTTGCAAGACATCATGGAGATTGATCTGGTTCCATATGGAAACGCACAGgAGACACAAGCTCAAGGGAAGTACATCTTCACCTGTCAGCACGGAGAAGATGAATGTCTAGGTAATATGATTGAGACATGCATGCTGAATAAACTAGGCTTGGATGCTGTTATGGTTATTTTCTGCATGGAGTCGGGAAACGATGTGCTGAAATCAGCCCAGCCTTGTCTTGGAGTCTATCGTCCTGATGTGACCTGGGATTCAATTATGCAGTGTGTGAAGGGCGACCAAGGCAATAAATTAATGCACGAAAATGCAGTGAAAACCGATGCACTGAATCCGCCTCATCAATATGTGCCGTGGATAACCGTTAACGGAGAACACACAGATGATCTTCAGGACAAGGCGATGGGTTCTCTCTTCAGTCTGGTGTGCAGCTTGTACAAGggtCAAAAACCAGCTGCTTGTACTCTAGGGCTGAAGAAGAACACCAACAATTACTGTATGAACTAATCAGGGTATCTGAAAACAACACTACTCGCGTCAGGGATGAAGACAGTGTATGAAACCAAAGCAAGCACATGCTGAAATGcagattttttatttgaataattagtttgctgttgttattttttatatgtacatGAAAGTATGCATGCATACAATGTATTAAAAGCTAATTTCCATTA
>TCONS_00030903
AGACAAGCTGAACACTGGGAATCATCATGTTCGGCTTTAACCTGTGCGTTGTGCTCGTCGCCGTGTTTTCTCTGAGTAAATGCAGCGCTCGGTTTGTTTACTCCTGTAAATATCCGCCTTCACAATGGTGCAGCTCCGAGGACATAGCAGCTGAATGTGGGGTGCTGGAACAATGCATGAAGTATAACTCGACAAAGGCCGCTGACAAGGTGAAAGTGAGCCTCTACTATGAATCTCTGTGCCCAGGATGCAGAATGTTTCTTACATCTCAGCTCGTGCCAACCTTGATTATGTTGCAAGACATCATGGAGATTGATCTGGTTCCATATGGAAACGCACAGgAGACACAAGCTCAAGGGAAGTACATCTTCACCTGTCAGCACGGAGAAGATGAATGTCTAGGTAATATGATTGAGGTGaggttttaacatttatttcaccTTTCGAGTAAATTAAACCCGTAAGTGGATTGATGTTGATATTTTAAGCATTGTTTAGCACTGAGATTAAAGATTCTGTTGTTTAACATGCTTTCTGTCAGACATGCATGCTGAATAAACTAGGCTTGGATGCTGTTATGGTTATTTTCTGCATGGAGTCGGGAAACGATGTGCTGAAATCAGCCCAGCCT

Function

symbol description
ifi30 Enables oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor and protein-disulfide reductase (NAD(P)) activity. Predicted to act upstream of or within immune system process. Predicted to be located in extracellular region. Predicted to be active in lysosome. Is expressed in cardiovascular system; digestive system; muscle; pleuroperitoneal region; and yolk syncytial layer. Orthologous to human IFI30 (IFI30 lysosomal thiol reductase).

GO:

id name namespace
GO:0002376 immune system process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005764 lysosome cellular_component
GO:0005576 extracellular region cellular_component
GO:0047134 protein-disulfide reductase activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0016667 oxidoreductase activity, acting on a sulfur group of donors molecular_function

KEGG:

id description
ko04612 Antigen processing and presentation

ZFIN:

id description
ZDB-GENE-030131-8447 Enables oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor and protein-disulfide reductase (NAD(P)) activity. Predicted to act upstream of or within immune system process. Predicted to be located in extracellular region. Predicted to be active in lysosome. Is expressed in cardiovascular system; digestive system; muscle; pleuroperitoneal region; and yolk syncytial layer. Orthologous to human IFI30 (IFI30 lysosomal thiol reductase).

Ensembl:

ensembl_id ENSDARG00000056378

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030902 False 1041 mRNA 0.43 7 24762567 24767470
TCONS_00030903 True 631 lncRNA 0.44 3 24762638 24764588

Neighbor

gene id symbol gene type direction distance location
XLOC_015448 pik3r2 coding upstream 7220 24700922 ~ 24755347 (+)
XLOC_015449 NA coding upstream 41780 24716314 ~ 24720787 (+)
XLOC_015447 mast3a coding upstream 79202 24638367 ~ 24683365 (+)
XLOC_015446 NA coding upstream 150499 24603292 ~ 24612068 (+)
XLOC_015445 angptl4 coding upstream 220049 24536762 ~ 24542518 (+)
XLOC_015451 mpv17l2 coding downstream 2965 24770435 ~ 24778912 (+)
XLOC_015452 pde4ca coding downstream 13556 24781026 ~ 24866649 (+)
XLOC_015453 rab3aa coding downstream 100064 24867534 ~ 24878813 (+)
XLOC_015454 si:dkey-149i17.7 coding downstream 118517 24885987 ~ 24886752 (+)
XLOC_015455 NA coding downstream 136196 24903666 ~ 24906615 (+)
XLOC_015443 NA non-coding upstream 264726 24484273 ~ 24497841 (+)
XLOC_015440 CR384062.1 non-coding upstream 411527 24348589 ~ 24351040 (+)
XLOC_015437 BX000358.1 non-coding upstream 501271 24261217 ~ 24261296 (+)
XLOC_015456 NA non-coding downstream 144823 24912293 ~ 24927754 (+)
XLOC_015461 NA non-coding downstream 363053 25130523 ~ 25137789 (+)
XLOC_015468 CR392012.1 non-coding downstream 1266705 26034175 ~ 26039606 (+)
XLOC_015470 NA non-coding downstream 1399108 26166578 ~ 26167419 (+)

Expression


Co-expression Network