XLOC_015452 (pde4ca)


Basic Information

Item Value
gene id XLOC_015452
gene name pde4ca
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 24781026 ~ 24866649 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030905
CATTTTGTCGTCGAGCGAGacgggcagacctaacgtagaGCAACGATAGACGCAAGAGAATGGGAAACTGTGCACCTGCACGCGACCAAACCGCTGCAGAGTCACCGGGCGGTGAAGAGGACGTTTTCGGGGATCCTGCAACTGCCCCGTCTGCCCCGCAGGCTCTCGGCCTATGGAGAATACAGCAGCACAACCGGGAAAGCCACCTTCTGCATCGGCCTTCCGAATGGCCTGGAGAGTGACACTCCACATGGGTCAAGTTTTGATGTGGAGAATGGGCTGTCGGTGGGCCGCAGTCCTCTGGACTCTCAGGCCAGTCCCGGCTCTGGCCTCGTGTTGCAGGCCAAT
>TCONS_00030906
GGAAACTCTCCCACCGGCTCCCCCAAAATGTCTCCGCGCAGTTCGCCTCGCAACTCTCCCCTACTCTTCCGGAGGCTGATGATGAACCGCAGCATTGCTTTGCAAAGACGCTTCACTTTGGCTCACACTCCCAGTTTTGATGTGGAGAATGGGCTGTCGGTGGGCCGCAGTCCTCTGGACTCTCAGGCCAGTCCCGGCTCTGGCCTCGTGTTGCAGGCCAATTTCCCTCACAGTCAGCGGCGCGAGTCTTTCCTGTACCGCTCCGACTCGGACTTTGACCTCTCACCCAAGGCCATGTCTCGAAATTCATCCACGGCCAGTGAGCTACATGGAGAAGACATGATAGTTACACCATTTGCACAGGTCCTTGCCAGCTTGAGGACTGTGCGGAGCAACTTTGCCGTTTTGACCCATCAGCAAGACCGCGTCCCTAGCAAGAAGTCTACAGGAAACAACCCACCATCCATGTGCAAGACAAGCCTACCAGAGGAGCCATTTCAGAAGTTGGCAGTGGAGACTCTGGACGAGCTGGACTGGTGTCTCGAACAGCTGGAGACTCTCAAGACACGTCACTCGGTCAGCGAGATGGCATCTAACAAGTTTAAAAGGATGCTGAATCGAGAATTAACCCAGCTCTCAGAGACTAGCAAGTCAGGAAACCAGGTCTCAGAGTACATCTCCAGCACATTCTTGGAGAAGCAACATGACATGGATATTATGTCCACCCCAAGCAAggagaaggagaagaagaagcgGCCCATGTCTCAGATCAGTGGCGTGAAGAAGCCCACACACAGCTCCAACATCGCTCCCTCCAGCATCCCTCGTTTTGGCGTCAGCACCAACCGGGAGGATCTACTGGCTAAAGAGTTAGAAGACTTTGACAGATGGGGTGTGGATATGTTCAAGATATCCGAGTGTTCTGGCAACAGACCGCTAACGGTGGCAATGTACACAACCTTTCAGGAAAGAGACTTGTTGAAATCCTTCAAAATTCCTGTAGACACATTCATTAACTACATGACGGCTCTGGAGGAAAACTACCGCTCAGATGTAGCTTACCATAACAGCATCCATGCAGCTGATGTGGTCCAGTCCACCCATGTCCTGCTGTCCACTCCTGCCCTTGAGGCTGTATTCACTGACCTTGAGATCTTGGCTGCAATGTTTGCCAGTGCCATTCATGACGTGGACCATCCTGGAGTGTCCAACCAATTCCTCATTAACACAAACTCAGAGCTGGCACTAATGTACAACGATTCCTCTGTTCTGGAGAACCACCACCTGGCTGTTGGCTTCAAGCTGCTGCAGGAAGAAAACTGTGACATTTTCCAGAACCTGACCAAGAAACAGAGGCAGTCGCTGCGCAAGATGGTCATTGACATGgtcttggccACTGATATGTCAAAGCATATGAACTTATTAGCGGATCTCAAGACTATGGTGGAGACAAAGAAGGTGACCAGCCTGGGTGTACTACTGCTAGACAACTATTCAGATCGCATACAGgtTCTTCAGAACATGGTGCACTGCGCTGACCTGAGCAACCCAACGAAGCCGCTGGAGCTTTACCGTCAGTGGACAGATCGCATCATGGTGGAGTTTTTCACTCAGGGCGACCGAGAGAGAGATAAGGGGATGGAGATCAGCCCCATGTGTGACAAACACAATGCCTCTATTGAGAAATCACAGGTGGGCTTCATCGACTACATCGTGCACCCGCTGTGGGAGACCTGGGCGGACCTGGTTCACCCTGATGCCCAGGAGATCCTGGACACGCTGGAGGACAATCGAGAGTGGTACCAAAGCATGATCCCTCACAGTCCCACCTCCACCCCAGAGGACAAGAGCGCTGTGATGGGGATGGGGGCTATGGGAGGTGGCATCGCTTCAGCGGGGGATAAATTCCAGTTTGAACTGACCTTGGAAGAGGAAGGTGAGTCTGACGTGGAGAGTCCCGTGGATGAAGACTTGACTTCCAGCACACGGGACTCCTCCAGGACAGATCCCCAAGGCAAACAAACATCTCCAGCTGCCCGCTTGCTGTCCGCTCGCTCCCCCGGCTGCAGGACAATGTCTTTTAAGATGGGCGAGCCACCAGACAGCGAAGATGAAGACAAAGAACTTGACCAAGAAGGGAAAAGCGTGTCGTGCCTGCGTTTGGGAACATAACACtcgtgcacttttttttttttttagtattttttcttatttgcttttttcGTACCTCTTCCTCACCACCTCCCAGTCCCACTCCATCCCATTTTCAGCTTCCTTGGGTGGAGGTGACGCAGTGCAGGAGAGGTAAAAAGGCTTCAGCGGGACATTTTTATACCGTAGTCACCTTGCACTGGagtgctgaagctgtttttatgaCTTCGGGATTTGTAAAACATTCAAATGTACTCGAGTGTCTTCCTGTGACGTACCAGGGTTTCAATTAATGAACAAGTGGACTTTCGAGAGCCGACTCTGAACATATTGATTGATAAACAAGACACTTTTTACGTGAGACGAAAGtgcactaaaatgtttttttgttttttttaaagacactgTTGACTTAAAGCTGGTCTATTATTAGCTGAACAAAAAAACAGCCTGACCTTAACACAACAGAACATCTCAGGATTCAAACAGACGATTGCTTTCATGTAGCAAACAGCTCGAGGGTACCCACATAGAGACCGCCGTCTTCCTTGGATCGCTCTTAAAATCTGTAGACTGAAGTCGAGCCATGATTGTGATCTTTTTTGTACTTGTATGTGGCGCCACCTAGTGCTTAATAGTGGAACCGCAGCCACATTTATAGGATTTATACCACCGTGTGGCTTTGTTTTGTTGTTCCTTTGCACTCGTTTGGCTGTTATAATTTGAACTTGATTCCCTCCTCACCTTAATTTCTAGGAATGCTGCTGGCGTCCACATGGTTTACATATGCTTctcgtttatttgtttattttctcagAGCTTGAGCATTAGTATGTCACAGCTTGCTTCTGATTGACCAGGTAGCACTTTAGAGGACGTTTTTGTCATTGCCAAACAAACACGCTGCTCCATCAGTAAGGGCTGGAGTCAATATTAACATGTGGTAGACTAGTTTTGGCAGCGTGCGAATGTGCCCTTTAAATTGGTCTCTGGAAAGCTGGGCTGGATTGGAAAcccacactgtaaataaatatcagtTAATTAACAGTCCTGTATTTTGGGATTTGTGGGTGGTTTTCAGTTATTTACACTTCAGAGTGCATTATGGGACAGTAATGTCTACTGAAACTCCACAAATGTAACAGTAAAGTTTAaattttgaaacaatatattgcataaaaatTTAAAAGGAAGAACCCAGCAAAtaattgtgtttaatagacgtctaattgacatctaaacgtagacagcttggctaaaacaaggctaaacttgggctgtcattgaaaatctaatagacatctaagcatagcccaaaactagactagtcatcaaatcgACAGATTAGGCAgcctttatatgtgtagtcattcatttctgtttatttgtttacatctgtttacatctattagattttcattgaCAGCCCAAATGTATCCTTGTTTTAGCTAatacgactatgtttagacgtctattagacatatttcaaaaacaaaaaatgtttgctgggTACTTACttccagggccgtttatatcgaaTTTGATATTTATCTgcacagcgctacccactgcgccaccatgctgcccaaaaatgaaatgctaaataataaaaaatgtataaacatttcaataaaagccactttgttaaactttCCAACATCCATAGTTAATATCAAGGTCCTGTAATGCAATTCATAAGTGtcaataaacagaaaacacccaTGAAGCACAAAATACAACTGTTAAGTGACAAACTGGCAAGACACTGGAGGTGAAGAGGGTCAAAACGTAACTAATATATATAGCATCATACTTTCCTATTGCTatttttcaagtttttaaaaTCGTATGTTTGAATATGCAATAaggcattatttttattaaatatttgataaTTTGCATAAACTTATTGTCCAAAAGTCTGTGTTTTGATGAActagctttacattttttgagccTATAACCATGTTAGATGTTTTTTACAGGGAGGATTTTTGTTAGGAATTCTTTTTATCACACAATGACAGCTCGTAAATGTTCAAATAAACACTACAATTATGTGTGAACATATCACTCTGTATAAACCCTTCAGagtatagatatgaataaaactgtgaaGTTTGTTAGTGCTGCTAAAGtggatatttatttaaataatctatcaTATTTTGAGCAAACGTCCTTTACAATTTCAAGTGAAATCTGCAGACACAAATTTATCAAGTGCAACAATTACAATTAAACAGCTTATTTggattatttatttgcattagaCTGacaaaaacatctcaagaatCTCACAATTGACAGTGTTTTTGCCTCCAGTGTCTCTCCTTAAtggattgttgttgttgattttttttttttacagtgcacattaGCTGTCCAGAAAGTGATCTGTGTCCTTAAACCACATGTGTACTTTCTCTGTTTCTGTGCTGGTCACACTGAAAATAagaggtacagttgaagtcagaaatattagccccctttgaatttttttcttcttatttttatattttccaaatgatgtttcacagagcaaggacattttcacagtatgtctgataatattttttcttctggagaaagtcttatttgttttatttcggctaaaataaaagcagtaattactttttaaacaccatttgagggacaaaattattagcttctttaagctatttttttctcaatagtctacagaacaaaccattaatatacaataacttgcataattacactaacctgcctagttaacctaattaacctagttaagcctttaaatgtcactttaagctgtatagaagtgtcttaaaaaatatctagtcaaatattatttactgtcatcatggaaaagaaaaaataatcagttattagatatgagttattaaaacgattatgattagaaatgtgttgaaaaaaatctttccattcaacagaaattggggaaaaaataaacaagcggtctgataattcaggggggtttgtaattctgacttcaactgtatattaacatCTTTACAAATGTATGATGGAAATGTATGAAGGAAAGTGAACAGGGTTTGTTCTGAAGGAAAGCAAAGCTGTACGCTAGCTGTCGAACACACACAAAGCCAAAGTCCATTGTCGTGCCAGAGTTTTTGTGTTCTTCGGTTTTTGGCGATTGATCCGTGCTCTGCTCTTCACAGGGACATTGCCAATGACAGTACAAGTGCCAAGCAAAGCATGATCCATGCTGTACTGTAATTTCCATTTTGCCACTGGCTAATTTCCATCAATATGACATCTACTACTGTCGCTAACATACTGAGTTGATCATTTCTATCTTTCTTTATTCAGCGTTTTATTTAAGATTGTTCAAGTCTTTCTGACGCATCGCAGGTCAGATTATTTGTGTCCTTTTTTATACACCATGGTATGAACTTTAATATTGGATACAGTGAGTCTTTGTATGTAATTGGATCACAGTCAACGGGGCTTTAAATGTTCATCTTCATGTCAGTCTGTGCTCTTCACAGCAGCGTTTCGTGTGGTGAAAGAAATATTGAGTGGCCGTGCAGAGTTTTGGTCACGGCACACACCTCTGTTTGGTCTCTTTCTGTCGCAGATTTGACAATCCCAACAGTACTGTTTACCACTACAACTGTTACTAATGTTGCTGTGATTGTTTTCCTCTTCCCAATgccaataaacaaagaaatattaGTAA
>TCONS_00030907
ATGAGCGTGCCGGCAAACTGTGGATTCTCTTTCTCAGCTGATCGGGCGTTGAAGCAAAAGAACTGGAATTTGTACGGATCCCCCTGTGCCGTCAACAGACCCATCGACATTGTGCAGAAACGCAGGCGTTTTGATGTGGAGAATGGGCTGTCGGTGGGCCGCAGTCCTCTGGACTCTCAGGCCAGTCCCGGCTCTGGCCTCGTGTTGCAGGCCAATTTCCCTCACAGTCAGCGGCGCGAGTCTTTCCTGTACCGCTCCGACTCGGACTTTGACCTCTCACCCAAGGCCATGTCTCGAAATTCATCCACGGCCAGTGAGCTACATGGAGAAGACATGATAGTTACACCATTTGCACAGGTCCTTGCCAGCTTGAGGACTGTGCGGAGCAACTTTGCCGTTTTGACCCATCAGCAAGACCGCGTCCCTAGCAATGGTCATGAGTATATTAATGTGCTGCTGTATTTTGCAGAGGAGCCATTTCAGAAGTTGGCAGTGGAGACTCTGGACGAGCTGGACTGGTGTCTCGAACAGCTGGAGACTCTCAAGACACGTCACTCGGTCAGCGAGATGGCATCTAACAAGTTTAAAAGGATGCTGAATCGAGAATTAACCCAGCTCTCAGAGACTAGCAAGTCAGGAAACCAGGTCTCAGAGTACATCTCCAGCACATTCTTGGAGAAGCAACATGACATGGATATTATGTCCACCCCAAGCAAggagaaggagaagaagaagcgGCCCATGTCTCAGATCAGTGGCGTGAAGAAGCCCACACACAGCTCCAACATCGCTCCCTCCAGCATCCCTCGTTTTGGCGTCAGCACCAACCGGGAGGATCTACTGGCTAAAGAGTTAGAAGACTTTGACAGATGGGGTGTGGATATGTTCAAGATATCCGAGTGTTCTGGCAACAGACCGCTAACGGTGGCAATGTACACAACCTTTCAGGAAAGAGACTTGTTGAAATCCTTCAAAATTCCTGTAGACACATTCATTAACTACATGACGGCTCTGGAGGAAAACTACCGCTCAGATGTAGCTTACCATAACAGCATCCATGCAGCTGATGTGGTCCAGTCCACCCATGTCCTGCTGTCCACTCCTGCCCTTGAGGCTGTATTCACTGACCTTGAGATCTTGGCTGCAATGTTTGCCAGTGCCATTCATGACGTGGACCATCCTGGAGTGTCCAACCAATTCCTCATTAACACAAACTCAGAGCTGGCACTAATGTACAACGATTCCTCTGTTCTGGAGAACCACCACCTGGCTGTTGGCTTCAAGCTGCTGCAGGAAGAAAACTGTGACATTTTCCAGAACCTGACCAAGAAACAGAGGCAGTCGCTGCGCAAGATGGTCATTGACATGgtcttggccACTGATATGTCAAAGCATATGAACTTATTAGCGGATCTCAAGACTATGGTGGAGACAAAGAAGGTGACCAGCCTGGGTGTACTACTGCTAGACAACTATTCAGATCGCATACAGgtTCTTCAGAACATGGTGCACTGCGCTGACCTGAGCAACCCAACGAAGCCGCTGGAGCTTTACCGTCAGTGGACAGATCGCATCATGGTGGAGTTTTTCACTCAGGGCGACCGAGAGAGAGATAAGGGGATGGAGATCAGCCCCATGTGTGACAAACACAATGCCTCTATTGAGAAATCACAGGTGGGCTTCATCGACTACATCGTGCACCCGCTGTGGGAGACCTGGGCGGACCTGGTTCACCCTGATGCCCAGGAGATCCTGGACACGCTGGAGGACAATCGAGAGTGGTACCAAAGCATGATCCCTCACAGTCCCACCTCCACCCCAGAGGACAAGAGTGGCATCGCTTCAGCGGGGGATAAATTCCAGTTTGAACTGACCTTGGAAGAGGAAGGTGAGTCTGACGTGGAGAGTCCCGTGGATGAAGACTTGACTTCCAGCAAACAAACATCTCCAGCTGCCCGCTTGCTGTCCGCTCGCTCCCCCGGCTGCAGGACAATGTCTTTTAAGATGGGCGAGCCACCAGACAGCGAAGATGAAGACAAAGAACTTGACCAAGAAGGGAAAAGCGTGTCGTGCCTGCGTTTGGGAACATAA
>TCONS_00030908
AAGGTCTCAATGACCTTCTCCACCAGTTCAGGTCATTGGCACAGTCTGTGTGCTGAGCATTTAGCGATGCTGGCTACAATTTATCTGATAtaagaacaataaaaaaagaaactctcCTTTTACAGCTCCACTAGAGTTTAACATTTTGATGTGGAGAATGGGCTGTCGGTGGGCCGCAGTCCTCTGGACTCTCAGGCCAGTCCCGGCTCTGGCCTCGTGTTGCAGGCCAATTTCCCTCACAGTCAGCGGCGCGAGTCTTTCCTGTACCGCTCCGACTCGGACTTTGACCTCTCACCCAAGGCCATGTCTCGAAATTCATCCACGGCCAGTGAGCTGGAAGAGAGTTTGAAGCACTGGGAAGTCAACTGGCTCAATCGGTGAgaggagacagagagaaataTTGACTTGCTCTTGAAAGGGTCATCACGCATTTCTCCACTACAAGATCCAGACCCGTTTTCTCCccaacactcttaaaaataagaaGGGTTTGCAGTGATAAAGAAGAACCATTTGAGTTTCTGAAAGAATGAAATAGTGGAGAATATTTGAAGGGGACTTGAATTACATTTGCAattttatggtaacactttacttaaaggggtgtTCATTAGACTGTcataaaatctttaaaatcatGAAGTGATGCATGTTATAAAAATGAATCGGATTTTATGCATATGCTTATGACAGCAGTCATAAAGTGTCATTCTCTCAGTtatgttttaaatgcaaatgttacaacttaaaatgaacaaaattcaCCTACCAAtaattaccaagacaacatatcTTGTCATAAGTCTGTCATGAACATGTTTGTTGTAAGGAAATTATAATCAGTGTATCCGCtaagtcttaaagtcttaaaatgtcttaaatctcaaaagcaagTTTT

Function

symbol description
pde4ca Predicted to enable 3',5'-cyclic-AMP phosphodiesterase activity. Predicted to be involved in signal transduction. Predicted to be active in cytosol; nucleus; and perinuclear region of cytoplasm. Orthologous to human PDE4C (phosphodiesterase 4C).

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005829 cytosol cellular_component
GO:0005575 cellular_component cellular_component
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function
GO:0004115 3',5'-cyclic-AMP phosphodiesterase activity molecular_function
GO:0008081 phosphoric diester hydrolase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-070912-373 Predicted to enable 3',5'-cyclic-AMP phosphodiesterase activity. Predicted to be involved in signal transduction. Predicted to be active in cytosol; nucleus; and perinuclear region of cytoplasm. Orthologous to human PDE4C (phosphodiesterase 4C).

Ensembl:

ensembl_id ENSDARG00000013221

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030905 False 348 mRNA 0.59 3 24781026 24843233
TCONS_00030906 False 5860 mRNA 0.42 15 24786765 24866649
TCONS_00030907 False 2091 mRNA 0.52 16 24819790 24862961
TCONS_00030908 True 898 processed_transcript 0.40 3 24842587 24845999

Neighbor

gene id symbol gene type direction distance location
XLOC_015451 mpv17l2 coding upstream 2114 24770435 ~ 24778912 (+)
XLOC_015450 ifi30 coding upstream 13556 24762567 ~ 24767470 (+)
XLOC_015448 pik3r2 coding upstream 25679 24700922 ~ 24755347 (+)
XLOC_015449 NA coding upstream 60239 24716314 ~ 24720787 (+)
XLOC_015447 mast3a coding upstream 97661 24638367 ~ 24683365 (+)
XLOC_015453 rab3aa coding downstream 885 24867534 ~ 24878813 (+)
XLOC_015454 si:dkey-149i17.7 coding downstream 19338 24885987 ~ 24886752 (+)
XLOC_015455 NA coding downstream 37017 24903666 ~ 24906615 (+)
XLOC_015456 NA coding downstream 45644 24912293 ~ 24927754 (+)
XLOC_015457 agtr1a coding downstream 65028 24931677 ~ 24932753 (+)
XLOC_015446 NA non-coding upstream 168958 24603292 ~ 24612068 (+)
XLOC_015443 NA non-coding upstream 283185 24484273 ~ 24497841 (+)
XLOC_015440 CR384062.1 non-coding upstream 429986 24348589 ~ 24351040 (+)
XLOC_015437 BX000358.1 non-coding upstream 519730 24261217 ~ 24261296 (+)
XLOC_015461 NA non-coding downstream 263874 25130523 ~ 25137789 (+)
XLOC_015468 CR392012.1 non-coding downstream 1167526 26034175 ~ 26039606 (+)
XLOC_015470 NA non-coding downstream 1299929 26166578 ~ 26167419 (+)

Expression


Co-expression Network