XLOC_015453 (rab3aa)


Basic Information

Item Value
gene id XLOC_015453
gene name rab3aa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 24867534 ~ 24878813 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030909
AGTTCTTTAATACTGAGAAATATTTCACTTTGAtctgtgtatttaaaataatagataacataaatatacacctatagcgcatgtgtttagactgtgggggaaaccagagcacccggagaaaacccacgcaaacacagggagaacatgcaggctccacacagaaatgtcaactgacccagccgaggctcgaaccagcgaccttcttgctgtgaggcgacagtgctaaccactgcgtcaccctaatCCAGCttcatatatataataatatgacaTTATAAAATTGAAATGGTGGAAACTGTAATTTTAAATGGTCTTAAATTCAACTAAAACTGACCACTATTCTCTCCAATATGCTCTGTTCTTCCTCATATCCAGTAACGTTAGACCGCTAAGTCACTAAGGTGACCAGGCGTGTGTGTGATTGGCTCATACACACTTCCGTCATTGTTTAGCTCCGCCCTCCGCTGACTCCCGTCGAGTGACGAATGCAGGAGGAGCGCAGGTGCACAGGCTGGAAACTGCATCCAAACCACAGCAAATAAACCTGCCGTTACGATGGCTTCAGCGAATGATGCTCGGTATGGACAAAAAGACTCTGCAGAACAGAACTTTGACTACATGTTTAAGGTCCTGATCATTGGTAACAGCAGTGTTGGCAAAACTAGTTTCCTGTTCCGTTATGCTGATGACTCCTTCACACCTGCTTTTGTCAGCACTGTCGGCATAGACTTCAAAGTCAAGACCATCTATAGGAACGACAAGAGGATAAAGCTCCAAATATGGGACACTGCTGGGCAGGAGAGGTACAGGACCATCACCACAGCTTACTATCGCGGAGCAATGGGCTTCATTCTTATGTATGACATCACCAACGAGGATTCTTTTAATGCCGTTCAGGACTGGTCCACACAGATTAAGACGTATTCATGGGACAACGCTCAAGTGCTGCTGGTGGGAAATAAGTGTGATATGGAAGATGAGAGAGTTGTTGCTGGACAGAGAGGCAGACAATTGTCTGAACAGCTAGGCTTTGAGTTTTTTGAAGCCAGTGCCAAGGACAATATAAACGTCAAGCAGACATTTGAGCGTCTGGTGGATGTAATCTGTGAGAGAATGTCAGAGAACCTGGAGTCAGCAGATCCATCCATGACTGGAAACAAGCTGGGTCCCGAGCTCTCAGAGCAACCGCAGCGCTCACACAAGGACTGCGCTTGCTAACCGGAATCACCCGCAAACGCAGACTGAACAATGGAAAACTTTGAGAGCTACTGCTATTCTTACTGATCAGGCGTGGATCCCTGAAATGTCTCACTTTCAGACTTTCATATACAGAAGGATGCAGTGATTGTTTGAAAACCTCCTGTATTACAGTATGTGATTATTTCCCCCCTATGCAATGCAGAAGATTTCTCATACCAAATAGTAACTAAATGCAGGGACGCTGTTTGTAAGGTGCAAAATTGATGATTTCTACCCTTTATTTATATCCTGTTTACAGTCCGTCTTAAACCTCCGCAAGCCACTGGAAtgaacttttttatatatacagagAAATTTAACACATTAGGAAGCTTTATATGTAAtcactgttaaattacagaccaTGAAACTGAGTTGGAGGAGTAGAACACTTGGTTTTGATACTCtttttgtagtttgtcattttgaGTTTTGTTCGTTTTCTAAATTGTACAATAGTTCCACTACTGTTTCTGCACTATGACggatgtcattttaaaaaattgcaCACAGGTTTTAAGTGTGGTACATCATATTATGCTGTTTTTCACCCTTGGACAGATCGCTTATGATAATCCACTACACTAGCAACTGATATGTGCTGGACACTTAATGTTACAAGTTTTATTCCAAATGAAATGGCCACATGCATCTGTTAGAGTTCAATAAAAGCTTTTGTTTGGAATCTGTTGTGTTGTGACTGTCATTGGGAATGACCTGTGCCTTTTATATGAGATGTAATCAGTGTCACTGAGTGATGATGGCCTGTGCAACTTGCAGAACATTCAGGGGGCATCAGTAAGTCTTCAAATAAACAGTTTGATAAACGAAAGATATTT
>TCONS_00030910
GAGTGACGAATGCAGGAGGAGCGCAGGTGCACAGGCTGGAAACTGCATCCAAACCACAGCAAATAAACCTGCCGTTACGATGGCTTCAGCGAATGATGCTCGGTATGGACAAAAAGACTCTGCAGAACAGAACTTTGACTACATGTTTAAGGTCCTGATCATTGGTAACAGCAGTGTTGGCAAAACTAGTTTCCTGTTCCGTTATGCTGATGACTCCTTCACACCTGCTTTTGTCAGCACTGTCGGCATAGACTTCAAAGTCAAGACCATCTATAGGAACGACAAGAGGATAAAGCTCCAAATATGGGACACTGCTGGGCAGGAGAGGTACAGGACCATCACCACAGCTTACTATCGCGGAGCAATGGGCTTCATTCTTATGTATGACATCACCAACGAGGATTCTTTTAATGCCGTTCAGGACTGGTCCACACAGATTAAGACGTATTCATGGGACAACGCTCAAGTGCTGCTGGTGGGAAATAAGTGTGATATGGAAGATGAGAGAGTTGTTGCTGGACAGAGAGGCAGACAATTGTCTGAACAGCTAGGCTTTGAGTTTTTTGAAGCCAGTGCCAAGGACAATATAAACGTCAAGCAGACATTTGAGCGTCTGGTGGATGTAATCTGTGAGAGAATGTCAGAGAACCTGGAGTCAGCAGATCCATCCATGACTGGAAACAAGCTGGGTCCCGAGCTCTCAGAGCAACCGCAGCGCTCACACAAGGACTGCGCTTGCTAACCGGAATCACCCGCAAACGCAGACTGAACAATGGAAAACTTTGGTAAGGGATGAGCTGATGAGATGCGGAGAGCCTGTCTTTTTCTGCCAGCATCTTTATACTAGATTTTGAATGATTACAAGTCAATTTAGGGTCTAATGAATTACAATGTGAAATCGGGTGAATGACATTGTGTGGTCCAAATTCACATAAATATCCTCAGCTCTTTGGCAAGACATATTTGATTCTTTTCCAAACAAACATTTACAGCTTTACGATCAGACTTTAGTGTGGAAACCATCAGCATGAAGGCTCATGATTGATTCAATCTTAAACTTGAATTTTCCGTAAAGTACTGTTTCACTCTTTtataaaagtaaagagtaaatatCGAAGACACACTAATTCATTTGCTCCCTATCACTTTTAAATAACAGCAGgtgtattttattatacatattatattatattatataagtaaAATGCTATACGTGTCATAATCAATGTTATTAGGAAAAAATAATTATGGTGTGCTTAAATGCaacttgtttttgtaaaatgaaaaattattattattattattattattgaattttcAGTCATGTTTAGTCCAGTTCATCCACATACTGATGATTATTTTACCAcatgtatgagtgtctgtgtgcatgttaGTACGCCATCCTAGCATAGATATTTTGTTTACAGTAATAGATAAGGGGTTTATTATCATTCCACTGGCTGAAAGCAAAAACATGAATTGATGAGCTTTAACTGTGTATTTTGAAGAAACCGTAATATTAAAAACTAATGTTATTCGCTTAAAGCTCTCATTTTGGCCTCAGAAATAAATCCTGCTAAGATAATAAGTTCCTTTATTGAATATGCATCATTGATTGATCACTTGTTAGTGAACACGATACTGTTGTTAATTATGTTATGATTAAGTGTTAATTTACTGCTTTATTTATTGCgtatttattttcttgcatttATATTGGCGTATGTGTTCTGTTTTCGATTAAGAGAGCTACTGCTATTCTTACTGATCAGGCGTGGATCCCTGAAATGTCTCACTTTCAGACTTTCATATACAGAAGGATGCAGTGATTGTTTGAAAACCTCCTGTATTACAGTATGTGATTATTTCCCCCCTATGCAATGCAGAAGATTTCTCATACCAAATAGTAACTAAATGCAGGGACGCTGTTTGTAAGGTGCAAAATTGATGATTTCTACCCTTTATTTATATCCTGTTTACAGTCCGTCTTAAACCTCCGCAAGCCACTGGAAtgaacttttttatatatacagagAAATTTAACACATTAGGAAGCTTTATATGTAAtcactgttaaattacagaccaTGAAACTGAGTTGGAGGAGTAGAACACTTGGTTTTGATACTCtttttgtagtttgtcattttgaGTTTTGTTCGTTTTCTAAATTGTACAATAGTTCCACTACTGTTTCTGCACTATGACggatgtcattttaaaaaattgcaCACAGGTTTTAAGTGTGGTACATCATATTATGCTGTTTTTCACCCTTGGACAGATCGCTTATGATAATCCACTACACTAGCAACTGATATGTGCTGGACACTTAATGTTACAAGTTTTATTCCAAATGAAATGGCCACATGCATCTGTTAGAGTTCAATAAAAGCTTTTGTTTGGAA

Function

symbol description
rab3aa Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in several processes, including maintenance of presynaptic active zone structure; regulation of vesicle-mediated transport; and secretion by cell. Predicted to act upstream of or within protein transport. Predicted to be located in membrane. Predicted to be active in axon; cytoplasmic vesicle; and plasma membrane. Predicted to be anchored component of synaptic vesicle membrane. Orthologous to human RAB3A (RAB3A, member RAS oncogene family).

GO:

id name namespace
GO:0072659 protein localization to plasma membrane biological_process
GO:0006904 vesicle docking involved in exocytosis biological_process
GO:0009306 protein secretion biological_process
GO:0048790 maintenance of presynaptic active zone structure biological_process
GO:0017157 regulation of exocytosis biological_process
GO:0031630 regulation of synaptic vesicle fusion to presynaptic active zone membrane biological_process
GO:0007409 axonogenesis biological_process
GO:0005768 endosome cellular_component
GO:0030424 axon cellular_component
GO:0005886 plasma membrane cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0008021 synaptic vesicle cellular_component
GO:0098993 anchored component of synaptic vesicle membrane cellular_component
GO:0031982 vesicle cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-2 Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in several processes, including maintenance of presynaptic active zone structure; regulation of vesicle-mediated transport; and secretion by cell. Predicted to act upstream of or within protein transport. Predicted to be located in membrane. Predicted to be active in axon; cytoplasmic vesicle; and plasma membrane. Predicted to be anchored component of synaptic vesicle membrane. Orthologous to human RAB3A (RAB3A, member RAS oncogene family).

Ensembl:

ensembl_id ENSDARG00000056347

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030909 False 2078 mRNA 0.42 6 24867534 24878813
TCONS_00030910 True 2408 mRNA 0.38 5 24868010 24878659

Neighbor

gene id symbol gene type direction distance location
XLOC_015452 pde4ca coding upstream 885 24781026 ~ 24866649 (+)
XLOC_015451 mpv17l2 coding upstream 88622 24770435 ~ 24778912 (+)
XLOC_015450 ifi30 coding upstream 100064 24762567 ~ 24767470 (+)
XLOC_015448 pik3r2 coding upstream 112187 24700922 ~ 24755347 (+)
XLOC_015449 NA coding upstream 146747 24716314 ~ 24720787 (+)
XLOC_015454 si:dkey-149i17.7 coding downstream 7174 24885987 ~ 24886752 (+)
XLOC_015455 NA coding downstream 24853 24903666 ~ 24906615 (+)
XLOC_015456 NA coding downstream 33480 24912293 ~ 24927754 (+)
XLOC_015457 agtr1a coding downstream 52864 24931677 ~ 24932753 (+)
XLOC_015458 gyg1a coding downstream 57953 24936766 ~ 24944819 (+)
XLOC_015446 NA non-coding upstream 255466 24603292 ~ 24612068 (+)
XLOC_015443 NA non-coding upstream 369693 24484273 ~ 24497841 (+)
XLOC_015440 CR384062.1 non-coding upstream 516494 24348589 ~ 24351040 (+)
XLOC_015437 BX000358.1 non-coding upstream 606238 24261217 ~ 24261296 (+)
XLOC_015461 NA non-coding downstream 251710 25130523 ~ 25137789 (+)
XLOC_015468 CR392012.1 non-coding downstream 1155362 26034175 ~ 26039606 (+)
XLOC_015470 NA non-coding downstream 1287765 26166578 ~ 26167419 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_07962260_07967751 RAB3A.L, RAB3A, RAB3AA, RAB3AB coding CI01000004 null 7962260 ~ 7968607 (+)