XLOC_015454 (si:dkey-149i17.7)


Basic Information

Item Value
gene id XLOC_015454
gene name si:dkey-149i17.7
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 24885987 ~ 24886752 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030911
ACCTGTAAGAAAACCTACTGCACAATGAAGGAGCTCATCTGCCATCTGACGGCGGAGCATGTTAATGTGTCCGGAGAATCCAATTATGTGTGTTTATGGAACGATTGCTCCCGTCAAAGGACTCCATTTAAGGCCAAGTACAAACTGATCAATCATTTAAGGGTCCACACGGGAGAAAAGCCCTTTCTCTGTTCCTTCGGATGTGGGAAGGAGTTTGCCAGAGCGGAAAACTTGAAGATTCATGAAAGGACACATACAGGTGAAAAACCTTTCAGATGCCCTTTTGAGGCCTGTGAAAGGAGGTTTGCAAACAGCAGTGATAAACAAAAGCACATACGTGTTCATGCACCTGGCAAACAATATATGTGCATGTGCTGCAATAAGACATACTCTCATGCCAGCTCCCTCAGAAAACACACAAAG

Function

symbol description
si:dkey-149i17.7 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in central nervous system development and regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000094684

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030911 True 423 mRNA 0.45 2 24885987 24886752

Neighbor

gene id symbol gene type direction distance location
XLOC_015453 rab3aa coding upstream 7174 24867534 ~ 24878813 (+)
XLOC_015452 pde4ca coding upstream 19338 24781026 ~ 24866649 (+)
XLOC_015451 mpv17l2 coding upstream 107075 24770435 ~ 24778912 (+)
XLOC_015450 ifi30 coding upstream 118517 24762567 ~ 24767470 (+)
XLOC_015448 pik3r2 coding upstream 130640 24700922 ~ 24755347 (+)
XLOC_015455 NA coding downstream 16914 24903666 ~ 24906615 (+)
XLOC_015456 NA coding downstream 25541 24912293 ~ 24927754 (+)
XLOC_015457 agtr1a coding downstream 44925 24931677 ~ 24932753 (+)
XLOC_015458 gyg1a coding downstream 50014 24936766 ~ 24944819 (+)
XLOC_015459 stag1a coding downstream 132635 25019387 ~ 25108587 (+)
XLOC_015449 NA non-coding upstream 165200 24716314 ~ 24720787 (+)
XLOC_015446 NA non-coding upstream 273919 24603292 ~ 24612068 (+)
XLOC_015443 NA non-coding upstream 388146 24484273 ~ 24497841 (+)
XLOC_015440 CR384062.1 non-coding upstream 534947 24348589 ~ 24351040 (+)
XLOC_015437 BX000358.1 non-coding upstream 624691 24261217 ~ 24261296 (+)
XLOC_015461 NA non-coding downstream 243771 25130523 ~ 25137789 (+)
XLOC_015468 CR392012.1 non-coding downstream 1147423 26034175 ~ 26039606 (+)
XLOC_015470 NA non-coding downstream 1279826 26166578 ~ 26167419 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000004_07971396_07974484 NA coding CI01000004 null 7971324 ~ 7974503 (+)