XLOC_015461


Basic Information

Item Value
gene id XLOC_015461
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 25130523 ~ 25137789 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030918
CGTCTGTGTTTTATAAAGCGATAGTTGCGTGAAGATGTAGGCCACGGCGTACACGCAGTTTTATTAACCTCGGTTTTTGTTTTCAGCGTTCTGGCGTCGTGCGCTATTAGCTACTGTAACTTATGTTTCTACTCAAATTAAACGAAACTCTTGGAAACTAACATTGTTTACCTGCAAACATTTAACGGAAAACATGTGAGGAGGGATGTTCAGTCGACATTGATGTTCCTCAGAAAATTTACCATCAAGGTCTATTGCAAATTCTTACCAAATATTGCCTTCCACACCATCGTCCTGTCGACAAATGAGGTCTACAAATGTTTGTCAAGCCAAGCGATATAATTCTGCACTGCATTCACTCCCACAGAGAAGTAGCAGGGCCAGAAAGCAAAGCTTACACAGCCATGAAATCCATCTTGATAATGGTCATTAGTGACAGAGACGCCTGCCAGCTCCAACCTGCGGGCGTACATCATCCCATCATCCCTCAAAACATCATGCTCACCAGTCATAATATAAGCACGTGGCGCCATACGCAAAACCTCATCCTCCGCAAGTAACGGAGAGGCTCTGGAATCCAGTAAACCTGGAACATCACTTAAGATATTGGGAGATCCAGTCACTGGAAAAAcaggtttaaaatgttttcttatttcttttgGTAGAAGATTGGTCCAGTCCAGCTTTGCACGATTCTGGGACAACAGATTTTGGTCTTGGGCTGTGTGGTTGTTCATCATAATAGAGTGTGCAAGTTCAGGGTCAGCGCCCAGGTACTCCAACCAGAAACGAGCCATTAGTCTGCGGTATAGGATGGGGACATTATGGTTCTGCTGATAGGAAGCTGTGTTGAAGTCGAGTGCCTGAAGGACTGGGTAAATCAACACCTGCAGCTTGAATTTTGCTGAGagaatcatcACTTGCGTGTGCAACAAACCAGAGGTATGACAACAGAGGAAgtaccattttttaaaaagaggtgCTCCCGGCAACCCGAGTTCGATTCTTGGCTTGAGGTTCCTTGCCATTTCTTGTTCCTCTCTCCCTGCTCCCAGTGCATTCATATCTTCAGTCTCCACTGTCCtctcaattaaaggtgaaaaaccacATGGCGAGCAAGAACAGAATCAGCTGTATGTCCTACATGTTGTTTACAGGGCTGTTTGCATGTTATGGTATGCTTATTAATCACAATTTCAGCAGTACTCTACGCCTACCACAAGGGTGCTGCTGGCAGTGGAAACACATGTCTGATCAGAATGATACCATATTGCACTGCACTGAACCATACTGTTCAGTGAAAAGGCATTAAACACACCGCCACTGGACGTGTTGTCTGGACTGACAAATCTTGCTTATCTGTCTTGCAATTTGATGGACGAGGCTGAGTTTGCTGGTTCCCAGGAGAACGATTATTGCTTGCCTGCCAAATGTAAGGTTTGATGGAGGGGATTATGGTGTGGGGCTGTATTTTATGGGATCCTTAGTTCCAGTGAAAGAAACTTTTAATGCTTCATCATACCAAGACATTCTGGCTAACTTATGACCATTATAAAGTGTTTTATCAGATGCTAAAGAGAAGCATCCAATATTGGGAAATTTACGTGTGAATGAAACCACGATCAACCTTGAATAACAATGAATTATTTGTAGTGTTGGTCATTTTGAATTGTATTTGTGCACTATTT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030918 True 1688 lncRNA 0.43 3 25130523 25137789

Neighbor

gene id symbol gene type direction distance location
XLOC_015460 msl2a coding upstream 1114 25124498 ~ 25129409 (+)
XLOC_015459 stag1a coding upstream 21936 25019387 ~ 25108587 (+)
XLOC_015458 gyg1a coding upstream 185704 24936766 ~ 24944819 (+)
XLOC_015457 agtr1a coding upstream 197770 24931677 ~ 24932753 (+)
XLOC_015456 NA coding upstream 202769 24912293 ~ 24927754 (+)
XLOC_015462 ppp2r3a coding downstream 60859 25198648 ~ 25291181 (+)
XLOC_015463 fndc3ba coding downstream 177802 25315591 ~ 25544850 (+)
XLOC_015464 pld1a coding downstream 422767 25560556 ~ 25632090 (+)
XLOC_015465 tnika coding downstream 520169 25657958 ~ 25837986 (+)
XLOC_015466 eif5a2 coding downstream 701404 25839193 ~ 25845337 (+)
XLOC_015455 NA non-coding upstream 223908 24903666 ~ 24906615 (+)
XLOC_015449 NA non-coding upstream 409736 24716314 ~ 24720787 (+)
XLOC_015446 NA non-coding upstream 518455 24603292 ~ 24612068 (+)
XLOC_015443 NA non-coding upstream 632682 24484273 ~ 24497841 (+)
XLOC_015468 CR392012.1 non-coding downstream 896386 26034175 ~ 26039606 (+)
XLOC_015470 NA non-coding downstream 1028789 26166578 ~ 26167419 (+)
XLOC_015473 CR788230.1 non-coding downstream 1148676 26286465 ~ 26287505 (+)
XLOC_015478 NA non-coding downstream 1375819 26513608 ~ 26519549 (+)
XLOC_015479 NA non-coding downstream 1454906 26592695 ~ 26595418 (+)

Expression


Co-expression Network