XLOC_015470


Basic Information

Item Value
gene id XLOC_015470
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 26166578 ~ 26167419 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033544
tttgagctctctcagccaccatacAGATCTCCTCTTCTGACAATCCTATAGGTAAagcatatatttttaagtttttcagattataatgtgatttttttcctgGTATGTGAAGAGTAGCTGAAGCTGCATAAAAAAGTCAGTCATAAATCTTAAATACTGTATCATTTTCTTGTTGTTTCGGGGGGAATGTCAATGACAAGCTTGCTGTGCAGTAGATTGTCATAAGAACTAGACTGACAGAAGATGGAAGCGTACCACAGAACTGACCTCAAACTGACAAGGGAGAGAAGTTGGAAAGGAATTGCAACCTCACTGCATGTACCAGAGCCATAAATAGAACATGGAGCCGGTTTACTGCTGGACATTTGTCACTCACGTCGGATCACATCCAGTGTGGGCAGAATCGCTGTTTATTATGGCTGCAATTGTCTTTAGTTGCTTTGTGTGTAGacagtgtttgtttgtgtcatGAGAGAGGAAGAGCCAGAATGCATATTAAAACCTTTTGTCTGAAAATGTTGGTAACAAGTCATTCCAGTAGAAGAAATAAAGATCCCTCAGTACAAACTTCAAAAGCCATAGGCAAAAGCCAAAAGGCATTGAACAAGCAATATTTAGGGGAAAATGCATTACTGTGTAATGCTGAATTTTCCACACATCCAGCTTATGTTGAACTATTTAAAGTACAAGCTTACACCATGTCAGAAAtgttaaatctgtattttttcatCATGTCTGTGGTCtcacatttggg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033544 True 754 lncRNA 0.39 2 26166578 26167419

Neighbor

gene id symbol gene type direction distance location
XLOC_015469 grin3ba coding upstream 9794 26060528 ~ 26156784 (+)
XLOC_015468 CR392012.1 coding upstream 126972 26034175 ~ 26039606 (+)
XLOC_015467 slc7a14a coding upstream 175794 25860344 ~ 25990784 (+)
XLOC_015466 eif5a2 coding upstream 321241 25839193 ~ 25845337 (+)
XLOC_015465 tnika coding upstream 328592 25657958 ~ 25837986 (+)
XLOC_015471 plppr3a coding downstream 11677 26179096 ~ 26209425 (+)
XLOC_015472 palm1b coding downstream 69903 26237322 ~ 26284245 (+)
XLOC_015473 CR788230.1 coding downstream 119046 26286465 ~ 26287505 (+)
XLOC_015474 ptbp1a coding downstream 120882 26288301 ~ 26300619 (+)
XLOC_015475 efna2a coding downstream 136208 26303627 ~ 26444503 (+)
XLOC_015461 NA non-coding upstream 1028789 25130523 ~ 25137789 (+)
XLOC_015456 NA non-coding upstream 1238824 24912293 ~ 24927754 (+)
XLOC_015455 NA non-coding upstream 1259963 24903666 ~ 24906615 (+)
XLOC_015449 NA non-coding upstream 1445791 24716314 ~ 24720787 (+)
XLOC_015478 NA non-coding downstream 346189 26513608 ~ 26519549 (+)
XLOC_015479 NA non-coding downstream 425276 26592695 ~ 26595418 (+)
XLOC_015483 BX248497.1 non-coding downstream 500261 26667680 ~ 26672847 (+)
XLOC_015485 NA non-coding downstream 553649 26721068 ~ 26742206 (+)

Expression


Co-expression Network