XLOC_015487 (cdh7a)


Basic Information

Item Value
gene id XLOC_015487
gene name cdh7a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 27010439 ~ 27094653 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030977
ATGACTATACTGCTGTTGGCCCAGCGGGATGTGGGCTGTGGGGGGATGACTTTGAATTCTGTCCCGCTCCGTTCTGTTTCCCTGAGGCCCCTCAGAGATTCTGTGGGCACATCCCTTCAAAGACATAAGCGCAACTGGGTGTGGAACCAATTCTTTGTCCTAGAGGAGTACACTGGAGATGAACCTCTTTATGTTGGCAAGCTTCATTCTGATGTGGACAAAGGTGAGGGCAAAGTAAAATATGTGCTCAATGGTGAAGGTGCAACTTCCATTTTCACCATCGATGAGAACACAGGCGACATACATGCTACGAAGCGTCTGGATCGAGAGGAGCAAGCCTACTACACACTGCGAGCTCAGGCCAGAGACCGCGCAACCAATCTCCCAGTCGAACCAGAGTCGGAATTTGTTATCAAAGTCCAGGATATTAATGACAATGAGCCCAAGTTCCTGGATGGTCCTTATAATGCACAAGTGCCAGAAATGTCTCCTGTTGGCACATCTGTGGTTGAGGTTAAGGCGACTGACGCAGATGACCCCACATATGGAAACAGCGCCAGAGTTGTGTACAGCATCCTTGAGGGACAACCATACTTCTCTGTGGAACCAAAAACAGGAATTGTGCGGACAGCTCTGCCCAACATGGACCGAGAAGCACGGGACCAATATCTTCTAGTAATCCAGGCCAAAGACATGGTTGGCCAGATGGGAGGACTCTCAGGAACTACGTCGGTGACGGTCACTCTGACGGACGTTAATGACAACCCTCCCCGCTTTTCACGGAAATCCTATCAGTTTGCTGTGCCTGAATCCCTGCCTGTGGCGTCGGTGGTGGCCAAGATAAAAGCCTTGGATTCTGACATCGGACCAAATGCTGAGATGGACTACAGAATTATAGAGGGCGACGGCCTTGGGGTGTTCAGGGTCACAACAGACAAAGATACCCAGGAAGGAGTCATAACTCTGCAGAAGAATCTTGACTTTGAAACAAAGTCAAGCTACACTCTCAAAATTGAGGCATCCAACAGGAACATAGACCCACGGTTCTTGTCTCAAGGACCGTTCAGCGATACGGCAATGGTGAGACTGACTGTGGAGAATGTAGATGAGCCTCCTGTCTTCTCCTCTCCGCTCAGTAAAATGGTCGTCTCTGAAGCTGCTAAAGTGGGAACGATGATAGGAACCGTCTCTGCTATGGACCCAGACACCACCAACAGCCCCATTAGgtattcaATCGACAGAAATACAGACTTGGAGAGGTTTTTCAACATCGAGTCAACAACAGGAGTCATCAGCACTGCAAAGCCATTAGACAGAGAAGCAAACGCCGTTCATAACATCACCATCTTGGCTATTGAAAGCATGGATCCATCACAGGTGGGGAAAGGAGTGGCTCTGATTACAGTTATGGACATTAATGACAACGCACCAGTCTTTGCCATAGAATACGAGACGTTCCTGTGTGAAAGCGTTGGACCAGGACAGGTCATTGAAACCATAAGTGCTGTGGATAAAGATGAACCACCCAGCGGGCACCGCTTCTTCTTCTCCCTCACCGCAGAGACAGCTGGGAACATGAACTTCACTCTCCGAGACAATAAAGACAATACTGCTTCTGTTCTGACGAAGCGGAGTGGTTTTCAGAGGAGGGATCAGTCTATGTATCGACTGCCGGTGTTGATAGTGGACAGCGGGACTCCTGCCCTCAGCAGCACTAACACGCTGTCTATTAGAGTGTGTGACTGCGACCCTGATGGGACGCCCCAGTCGTGTGGCACAGAGGCCTTCATGCTGTCAGCAGGACTCAGCACCGGAGCACTCATCGCCATCCTTGCCTGCATCATCACCCTGCTTGTTCTGGTGCTGCTGATCGTGAcaatgaggaggaggaagaaggaaCCTCTGATCCTGGATGAAGACCGGGACGTGCGGGAGAACATTGTGCGCTACGACGACGAAGGCGGGGGCGAGGAAGACACAGAGGCCTTTGACATGGTGGCTCTGCGAAATCTCAATGTAGTGCGGGACAGCAAAGCCCGACGAGACGTCACCCCAGAGGTGCCTACCCTTTACTGCTCCCGGCCTCCCCcttacaaaatcaccccagaCAACGGGATCTTCAGGGAGTTTATATGGGACCGCCTGAAGGACGCTGACGTGGATCCTTCCGCACCGCCTTACGACTCCCTGCAGACGTACGCTTTCGAGGGCAGCGGCTCGGTGGCCGAGTCCCTCAGCTCCCTGGACTCCCTGAGCACAGACTCAGAGCAGAACTATGACTATTTGAGCGACTGGGGGCCTCGATTCAGGAAGCTAGCTGACCTGTACGGCCACGGAGACAGCAGCAATATATTCTCCTCCTAG
>TCONS_00030978
ACAGCATCCTTGAGGGACAACCATACTTCTCTGTGGAACCAAAAACAGGAATTGTGCGGACAGCTCTGCCCAACATGGACCGAGAAGCACGGGACCAATATCTTCTAGTAATCCAGGCCAAAGACATGGTTGGCCAGATGGGAGGACTCTCAGGAACTACGTCGGTGACGGTCACTCTGACGGACGTTAATGACAACCCTCCCCGCTTTTCACGGAGTATGATTCTACTACCAGCTATAAAGCAGTCGCAGACCCGATCCATCATTAACGCATGCTGTCTCTCCTTTTAAATTGCAAGCAAACTATCTGAGCTGTTTAATGACTCAGGCTGATCTTGTATTATAGAGATCAAGCGCTCTGTGTAGTCGCTGCGTAATTATCAGGTAGATGATCTTCCGAATAGAACTGAACAATCTTCATTTTATAatagaggattttttttttaagatcattgcCAGAGTTCTATTTTTAGCTGTGTGAATCTCTCCCCGCCATCAGGGAGTGTGTGAAGCTTAGACTATCCCCTTGCTTGCTATATCTATAGAGTGGCTTACCTGCTACGGAGCAGAGATACATTATTAGCTCAGACCTGGTGCTAACAGCTGGGTGataagaaaggaaaaa

Function

symbol description
cdh7a Predicted to enable calcium ion binding activity. Acts upstream of or within notochord cell differentiation. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in axis; central nervous system; neural keel; neural tube; and notochord. Orthologous to human CDH7 (cadherin 7).

GO:

id name namespace
GO:0098609 cell-cell adhesion biological_process
GO:0060034 notochord cell differentiation biological_process
GO:0030903 notochord development biological_process
GO:0007155 cell adhesion biological_process
GO:0007156 homophilic cell adhesion via plasma membrane adhesion molecules biological_process
GO:0005886 plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-061019-3 Predicted to enable calcium ion binding activity. Acts upstream of or within notochord cell differentiation. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Is expressed in axis; central nervous system; neural keel; neural tube; and notochord. Orthologous to human CDH7 (cadherin 7).

Ensembl:

ensembl_id ENSDARG00000023542

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030977 False 2364 mRNA 0.52 11 27010439 27094653
TCONS_00030978 True 624 lncRNA 0.45 2 27045170 27049566

Neighbor

gene id symbol gene type direction distance location
XLOC_015486 BX511023.1 coding upstream 94 27000542 ~ 27010345 (+)
XLOC_015485 NA coding upstream 268233 26721068 ~ 26742206 (+)
XLOC_015484 impa1 coding upstream 321531 26682913 ~ 26688908 (+)
XLOC_015482 asph coding upstream 328257 26655744 ~ 26682182 (+)
XLOC_015483 BX248497.1 coding upstream 337592 26667680 ~ 26672847 (+)
XLOC_015488 BX649522.3 coding downstream 123496 27218149 ~ 27242711 (+)
XLOC_015489 BX649522.1 coding downstream 226361 27321014 ~ 27324181 (+)
XLOC_015490 tesk2 coding downstream 235808 27330461 ~ 27380161 (+)
XLOC_015491 si:ch73-382f3.1 coding downstream 291964 27386617 ~ 27391558 (+)
XLOC_015492 selenop2 coding downstream 300145 27394798 ~ 27401105 (+)
XLOC_015479 NA non-coding upstream 415021 26592695 ~ 26595418 (+)
XLOC_015478 NA non-coding upstream 490890 26513608 ~ 26519549 (+)
XLOC_015500 CR925777.1 non-coding downstream 880901 27975554 ~ 28038625 (+)
XLOC_015501 NA non-coding downstream 1099485 28194138 ~ 28194608 (+)
XLOC_015502 NA non-coding downstream 1150807 28245460 ~ 28350447 (+)

Expression


Co-expression Network