XLOC_015489 (BX649522.1)


Basic Information

Item Value
gene id XLOC_015489
gene name BX649522.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 27321014 ~ 27324181 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030980
GAATAAACCATATGACAGAGGAGAGCTGGAACACTTCACTGCGTCTGACTTCTCATCATTTGATACACAAATGAAGGATGATAGTTGTTCAGAAAagtttaataatgtaattaatgtcagGCAAACAAGAAGATGTTAAAGCAAACAGATGATTTCTCCTTGAGAAGCCACATTGTACACTTTGTTTTTTAACCTCGCTCCATGGATGTGCTAACAATTCATGTCATGGAGGACTCGTCTGACAGCGCCGTGTTCCGGGTCCAGGTTCAGTGTGCTGACACTTTCCTGCTAAACTACTGGCTCCACAAGACCTTCTTCAACAATGGGGAAGTCCAGCAGATCAACACTCTGAGGATAAACGGCTGCCGTGGGCTAGTGTTTGTTTTGAGGGTGCTGCATCGCTCTTCACGCCTCCCTAATTCCCATTACTGGTGCCCTTTTCTAGTAACACTCTGCCTGGATGCCCTGGCATTTCACTACCACCTCCCCTCTGTGCCCCAGTGGAACGGCACCCTTCGAGAGGCGATGAGAGGAAACAGCCTTGAGCTCAGACGCTGACAGACTCGAGGCTTTGCTGTTTGCAGATCCTGTTAGTTTCAGATATTTGCTTACTAAAATGACGCACTGGAAGTAGCTCATTTTACCGTTGTAGATGTAGTACGTGCCGTCTTTGAACACAGCAACGGCAGGAACATCCTGCAGGGTGACTGCCTATGGAGATGACCAGTTATGAATTGTTTTTGAAAAGGATAATCTGAATATTTTCCAGATTATTTTACAGAAACATCTTACCTTTGGAAGGATTTCCTCAGaggcagtaaaaaaatatgtGTGGACAATAAACTCAGTGGCAGCTTTATAGTAttctttctgtaaaaaaaaaataataatcacaataaaatATC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000092151

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030980 True 905 processed_transcript 0.43 3 27321014 27324181

Neighbor

gene id symbol gene type direction distance location
XLOC_015488 BX649522.3 coding upstream 78303 27218149 ~ 27242711 (+)
XLOC_015487 cdh7a coding upstream 226361 27010439 ~ 27094653 (+)
XLOC_015486 BX511023.1 coding upstream 310669 27000542 ~ 27010345 (+)
XLOC_015485 NA coding upstream 578808 26721068 ~ 26742206 (+)
XLOC_015484 impa1 coding upstream 632106 26682913 ~ 26688908 (+)
XLOC_015490 tesk2 coding downstream 6280 27330461 ~ 27380161 (+)
XLOC_015491 si:ch73-382f3.1 coding downstream 62436 27386617 ~ 27391558 (+)
XLOC_015492 selenop2 coding downstream 70617 27394798 ~ 27401105 (+)
XLOC_015493 elovl8a coding downstream 79119 27403300 ~ 27409706 (+)
XLOC_015494 zswim5 coding downstream 166885 27491066 ~ 27543942 (+)
XLOC_015483 BX248497.1 non-coding upstream 648167 26667680 ~ 26672847 (+)
XLOC_015479 NA non-coding upstream 725596 26592695 ~ 26595418 (+)
XLOC_015500 CR925777.1 non-coding downstream 651373 27975554 ~ 28038625 (+)
XLOC_015501 NA non-coding downstream 869957 28194138 ~ 28194608 (+)
XLOC_015502 NA non-coding downstream 921279 28245460 ~ 28350447 (+)
XLOC_015503 NA non-coding downstream 1069762 28393943 ~ 28423487 (+)
XLOC_015511 NA non-coding downstream 2388029 29712210 ~ 29727457 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
tiger barb (Puntius tetrazona) LOC122358236 NA misc NC_056700.1 CM032069.1 12623823 ~ 12626387 (+)