XLOC_015493 (elovl8a)


Basic Information

Item Value
gene id XLOC_015493
gene name elovl8a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 27403300 ~ 27409706 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00030988
GATGCTGAACGAGAGCTCTGTGTCGTGATTCTATCATGTTCTTTCTCTGGTGGAATAGAAATAGCGATCATAATTGACATTTTATCACAGTTAGTCTTTAAAGATACAGTACAACCTTCAACGAACTCTTGTGCTGTGTCTAAAATCAACCGATAGATGGCGCTGCGGTGCGTTGCTCTGTGAACATCAAACGCAATGGTGTCTGTATCACCGTCGACATGGCAAAAGCTTCAGATACTTTACGAGAGGATCTTAGAAAACGGAGACAAGAGGACAGATGGATGGCTGCTGGTTTATTCTCCGCTGCCTGTCGGCGGAATCTTCCTCTGTTATCTTGTCATGGTATGGTTTGGACCCAAATTGATGGTTCACAGAGAACCAGTCAACATCCAAGCTCTacttattatttacaatttttccaTGGTGTGCCTTTCTGCTTATATGTTTTATGAGTTCACAGCCTCCTCTTGGTTGGCAAGTTACAGTTTGCTCTGTCAGCCTGTGGACTACACTGAAAACCCTCTGCCAATGCGGATGGCCAGAGTGTGCTGGTGGTTTTACTTCTCCAAAGTCATTGAACTTGCTGATACAATGTTCTTCATTCTGAGGAAGAAGAATAATCAGTTGACCTTTCTGCATGTGTATCATCATGGCACCATGATTTTCAACTGGTGGGCCGGGGTCAAGTATGTTGCAGGAGGGCAGTCTTTCCTTATTGGCCTCATAAACTCTTTTGTTCATGTGGTGATGTATATGTATTATGGCCTGGCAGCGCTGGGCCCTCAGATGCAGAAATACTTATGGTGGAAACGCTACCTCACTTCCCTCCAGCTGCTCCAGTTCTTTATTGTGACCATTCACACTGCGTTCAACCTCTATGCTGACTGTGACTTCCCTGACTCCATGAATATGGTGGTGCTCGGATACGCCCTCAGCCTAATCGCTTTGTTTAGTAACTTTTACTACCAGAGTTACCTCTCCAAGAAGACCAAGCTAGCCTAATAGCATCGATGCATATATTTATTGATAGGTTACTTGAATACAAACGTGTCATCATTGGTCCTTCACACTGAGAGTATCTTGAGGACTCTTGTTTAATCCGCTATTTCAGATTCATTTGTCTGTGTTTTCTCCCCTCCTCCAAACGGAGTCCACACAATCTTTGCACCCCCATCCCCCTCTGGTCATTAGGGATTGAGACCCTGCAACGCTCTAGCGATCTGGCCAAATTGAAATAAACCCGAGTCCACCTTC
>TCONS_00030989
CTTTAAAGATACAGTACAACCTTCAACGAACTCTTGTGCTGTGTCTAAAATCAACCGATAGATGGCGCTGCGGTGCGTTGCTCTGTGAACATCAAACGCAATGGTGTCTGTATCACCGTCGACATGGCAAAAGCTTCAGATACTTTACGAGAGGATCTTAGAAAACGGAGACAAGAGGACAGATGGATGGCTGCTGGTTTATTCTCCGCTGCCTGTCGGCGGAATCTTCCTCTGTTATCTTGTCATGGTATGGTTTGGACCCAAATTGATGGTTCACAGAGAACCAGTCAACATCCAAGCTCTacttattatttacaatttttccaTGGTGTGCCTTTCTGCTTATATGTTTTATGAGGTATGGACCatagacaaataaaaacattcattcattcattcattcattcattcattcattcatgttttgcTTTCAGTTCACAGCCTCCTCTTG

Function

symbol description
elovl8a Predicted to enable fatty acid elongase activity. Predicted to be involved in fatty acid biosynthetic process and sphingolipid biosynthetic process. Predicted to act upstream of or within fatty acid biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane.

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0006631 fatty acid metabolic process biological_process
GO:0006633 fatty acid biosynthetic process biological_process
GO:0030148 sphingolipid biosynthetic process biological_process
GO:0042761 very long-chain fatty acid biosynthetic process biological_process
GO:0019367 fatty acid elongation, saturated fatty acid biological_process
GO:0034625 fatty acid elongation, monounsaturated fatty acid biological_process
GO:0034626 fatty acid elongation, polyunsaturated fatty acid biological_process
GO:0030176 integral component of endoplasmic reticulum membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0102756 very-long-chain 3-ketoacyl-CoA synthase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0009922 fatty acid elongase activity molecular_function
GO:0102336 3-oxo-arachidoyl-CoA synthase activity molecular_function
GO:0102337 3-oxo-cerotoyl-CoA synthase activity molecular_function
GO:0102338 3-oxo-lignoceronyl-CoA synthase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060929-240 Predicted to enable fatty acid elongase activity. Predicted to be involved in fatty acid biosynthetic process and sphingolipid biosynthetic process. Predicted to act upstream of or within fatty acid biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane.

Ensembl:

ensembl_id ENSDARG00000068551

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00030988 False 1254 mRNA 0.45 8 27403300 27409706
TCONS_00030989 True 451 lncRNA 0.41 3 27403395 27404189

Neighbor

gene id symbol gene type direction distance location
XLOC_015492 selenop2 coding upstream 2195 27394798 ~ 27401105 (+)
XLOC_015491 si:ch73-382f3.1 coding upstream 11742 27386617 ~ 27391558 (+)
XLOC_015490 tesk2 coding upstream 23139 27330461 ~ 27380161 (+)
XLOC_015489 BX649522.1 coding upstream 79119 27321014 ~ 27324181 (+)
XLOC_015488 BX649522.3 coding upstream 160589 27218149 ~ 27242711 (+)
XLOC_015494 zswim5 coding downstream 81360 27491066 ~ 27543942 (+)
XLOC_015495 tmem68 coding downstream 242278 27651984 ~ 27665539 (+)
XLOC_015496 FO834800.2 coding downstream 420730 27830436 ~ 27842166 (+)
XLOC_015497 buc coding downstream 445396 27855102 ~ 27859558 (+)
XLOC_015498 rnf152 coding downstream 458124 27867830 ~ 27871054 (+)
XLOC_015486 BX511023.1 non-coding upstream 392955 27000542 ~ 27010345 (+)
XLOC_015485 NA non-coding upstream 661094 26721068 ~ 26742206 (+)
XLOC_015483 BX248497.1 non-coding upstream 730453 26667680 ~ 26672847 (+)
XLOC_015500 CR925777.1 non-coding downstream 565848 27975554 ~ 28038625 (+)
XLOC_015501 NA non-coding downstream 784432 28194138 ~ 28194608 (+)
XLOC_015502 NA non-coding downstream 835754 28245460 ~ 28350447 (+)
XLOC_015503 NA non-coding downstream 984237 28393943 ~ 28423487 (+)
XLOC_015511 NA non-coding downstream 2302504 29712210 ~ 29727457 (+)

Expression


Co-expression Network