XLOC_015502


Basic Information

Item Value
gene id XLOC_015502
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007113.7
NCBI id CM002886.2
chromosome length 59640629
location 28245460 ~ 28350447 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00033266
ATGGTCATTTCCTTTTGAAAACACAGTTTGTTGGAttataaagacacacacacacacacacacacacacacacacacacacacacacacacacacacacttgtgtcaGCAGCAgaggtcaaacacacacacacacacacagatgataaTGGCACAGTTTATATTCCAGTGAGGAGGATTCAGTGACTAATGCGCATCGTTTACTGCACCTGCGGCGGcactctgactgtgtgtgtgtttgtgtgtgtgtgtgttcagcttcAGCACCTGAGCAGTCTGGACCTGCGGCACATCTCGGAGCTCAACAACGAGACTGTGATGGAGGTGGTGAGAAAGTGCCGGAATCTGACATCACTCAACCTGTGTCTCAACTGGACCATCAAtgacaggtgTGTGGAGATCATTGCTAAAGAGGGCCGCAGTCTGAAGGAGCTGTATCTAGTGTCCTGCAAGATCACAGATCACGGTAAGACTGGAGATCATTTCAGATACGCTCAGTGTTTGTATAGCTGCCGCTGCTACACACTCACTGTACACACTCAAAACCCTCTGCTACACACTAGATGTCATTATATATACTCACTGTATACTATTACAGACCTCTGCTACACTCTAAATAACATACACTCAGTGTACACTATTATAACCCTCAATCAGCAGCTTTTGTGCTGATGTCAGGCCGCTATGACAAAATGTCAAGGAGGTTTGAACAGCGTTTTGGCTGAATAAATTCTTCATGAAGcagcattattttattatacagttAAAACCTGAAGTTTACATACAcactaaaaaaggaacataaccatttttattaaatgtctgatggtaaatcatactcaaacatttactattttaggtctgtcaggattacctaaatgattaaCATTTGcttaatgccagaataatgagagagattgagatttttgttattaatttctgcgcagtcaaaagtttacacacatttccttggtattttttagctttgcttttaaactgtataactttggtcaaatgttttgggtctccttccacaagcttctcacaatagtttgcaggaattttggcccattcctcctgacagaattggtgtaactgagtcagatttgtaggctgtcttgctcgcacaagctttttcaactctgcccacagattctctataggattgagaccagggctttgtgatggccactccaaaacattcactctgttgtccttaaagcacattttcactagtttggcagtgtgcttagggtcatggtctgtgtggaagacccatttgtggccaagttgtaatctcctggctgatgtcttgagatgctgcttcagtatttctgcataatgttctttcttcatgatgccatctatgctgtgaagtggaccagtccctcctgcagcagaacagccccacaacatgatgctgccgcccccatacttcacagttgggatggtgttctaggctcaTAAGCTTTCccttttgtcctccaaatgtaacactgctcattatggccaaacagttcaatcttagctccatcagagcacaggacatgtctccaaacattagtaTTTTCCCCGCGTAATACAGCAAATTgcaatctggctttgttgttgattctggcttgatGTTTTTCCTATGTTGTCACACAATTATGTATGGACTagagacagaagccctgcccatgatgcggatctgcatctattgtgaagtgaattcgACTTGCGAAGCGAGTAAAGTCAAAATGTTTACGTGTCTAGTGTGAACACCGCATAAAGCATCCCATTGTCAACGTTTAtatgcctatttatttatttattttaagaaccTCAAACTTTACCTACGTTCATGGCCATCAGCAGACttcatgtctttatttatttagttactgtTTATTTGTAGTTGTTATTTTCTCAAAAGCTTTGCATACTTTtac
>TCONS_00033267
ATGGTCATTTCCTTTTGAAAACACAGTTTGTTGGAttataaagacacacacacacacacacacacacacacacacacacacacacacacacacacacacttgtgtcaGCAGCAgaggtcaaacacacacacacacacacagatgataaTGGCACAGTTTATATTCCAGTGAGGAGGATTCAGTGACTAATGCGCATCGTTTACTGCACCTGCGGCGGcactctgactgtgtgtgtgtttgtgtgtgtgtgtgttcagcttcAGCACCTGAGCAGTCTGGACCTGCGGCACATCTCGGAGCTCAACAACGAGACTGTGATGGAGGTGGTGAGAAAGTGCCGGAATCTGACATCACTCAACCTGTGTCTCAACTGGACCATCAAtgacaggtgTGTGGAGATCATTGCTAAAGAGGGCCGCAGTCTGAAGGAGCTGTATCTAGTGTCCTGCAAGATCACAGATCACGgtactgaccagtgagtaaccgctcttgggctgcagggtgatatggctgtaatTGCAGAAGAACAGCGAGAGTGAAGGTTCTGGAAAGTGACAATCAGTGAAATTCATAACATTGTGATTGAAAAAGTGTGCTGCTGTTTTCAGCTTTACAgcacagaaataaataacagcTTATTATATTTTGACATAGATGTATTGTTATATAGTAAGCTGtaatttatttgatttctgtGATGTAATCCTGAAAATTCTCCTTTAGGTCACAGAATTAAGTTACAGTTTACTATTTATCAACATAAAAAGCAGCtgttttgaattaaaatattattattcattattattcaaTTGTTTTACTATTTTATATAGTAAACCGTGACTAATTTATGCGATTTAAAGTTGGAAATGTATCTTTACAccacagaaataaatgacagttTACTCTATATTGACAGAGAAAActgctatttttaatttaaacataatttaaatattattttgtgtgacatgctggc

Function

GO:

id name namespace
GO:0007215 glutamate receptor signaling pathway biological_process
GO:0007267 cell-cell signaling biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0001505 regulation of neurotransmitter levels biological_process
GO:0098916 anterograde trans-synaptic signaling biological_process
GO:0098655 cation transmembrane transport biological_process
GO:0048284 organelle fusion biological_process
GO:0099536 synaptic signaling biological_process
GO:0099537 trans-synaptic signaling biological_process
GO:0006810 transport biological_process
GO:0006811 ion transport biological_process
GO:0006812 cation transport biological_process
GO:0030141 secretory granule cellular_component
GO:0043005 neuron projection cellular_component
GO:0098590 plasma membrane region cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0033176 proton-transporting V-type ATPase complex cellular_component
GO:0044459 obsolete plasma membrane part cellular_component
GO:0033180 proton-transporting V-type ATPase, V1 domain cellular_component
GO:0045202 synapse cellular_component
GO:0005886 plasma membrane cellular_component
GO:0099503 secretory vesicle cellular_component
GO:0071944 cell periphery cellular_component
GO:0097458 obsolete neuron part cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0017075 syntaxin-1 binding molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0000149 SNARE binding molecular_function
GO:0019905 syntaxin binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00033266 False 1930 lncRNA 0.42 2 28245460 28348321
TCONS_00033267 True 976 lncRNA 0.39 3 28245460 28350447

Neighbor

gene id symbol gene type direction distance location
XLOC_015501 NA coding upstream 50852 28194138 ~ 28194608 (+)
XLOC_015500 CR925777.1 coding upstream 206835 27975554 ~ 28038625 (+)
XLOC_015499 mc4r coding upstream 311596 27932781 ~ 27933864 (+)
XLOC_015498 rnf152 coding upstream 374406 27867830 ~ 27871054 (+)
XLOC_015497 buc coding upstream 385902 27855102 ~ 27859558 (+)
XLOC_015503 NA coding downstream 43496 28393943 ~ 28423487 (+)
XLOC_015504 mmp15b coding downstream 102891 28453338 ~ 28521429 (+)
XLOC_015505 nadsyn1 coding downstream 321705 28672152 ~ 28692928 (+)
XLOC_015506 cdh10a coding downstream 539489 28889936 ~ 28934284 (+)
XLOC_015507 cdh12a coding downstream 645329 28995776 ~ 29116892 (+)
XLOC_015489 BX649522.1 non-coding upstream 921279 27321014 ~ 27324181 (+)
XLOC_015488 BX649522.3 non-coding upstream 1002749 27218149 ~ 27242711 (+)
XLOC_015486 BX511023.1 non-coding upstream 1235115 27000542 ~ 27010345 (+)
XLOC_015511 NA non-coding downstream 1361763 29712210 ~ 29727457 (+)
XLOC_015516 NA non-coding downstream 1722232 30072679 ~ 30089989 (+)
XLOC_015518 BX510360.1 non-coding downstream 1775967 30126414 ~ 30126936 (+)
XLOC_015521 NA non-coding downstream 1846923 30197370 ~ 30197741 (+)

Expression


Co-expression Network